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Cluster: Rep_1975_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1975_c_1 Rep_1975_c_1_8 8384 9118 + GT32
CAZyme Rep_1975_c_1 Rep_1975_c_1_9 9144 10271 + GT4
TC Rep_1975_c_1 Rep_1975_c_1_10 10299 10934 + 9.B.18.1.2
pfam Rep_1975_c_1 Rep_1975_c_1_11 10949 11560 + Hexapep | PglD_N
NULL(UNKNOWN) Rep_1975_c_1 Rep_1975_c_1_12 11649 13748 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1975_c_1 Rep_1975_c_1_13 13864 15432 + 2.A.3.3.14
pfam Rep_1975_c_1 Rep_1975_c_1_14 15480 16517 + Cu_amine_oxidN1 | Cu_amine_oxidN1
pfam Rep_1975_c_1 Rep_1975_c_1_15 16508 17398 + Trypsin_2
TC Rep_1975_c_1 Rep_1975_c_1_16 17420 19324 + 9.B.18.2.1
Gene ID: Rep_1975_c_1_8
Type: CAZyme
Location: 8384 - 9118 (+)
Gene ID: Rep_1975_c_1_9
Type: CAZyme
Location: 9144 - 10271 (+)
Gene ID: Rep_1975_c_1_10
Type: TC
Location: 10299 - 10934 (+)
Gene ID: Rep_1975_c_1_11
Type: pfam
Location: 10949 - 11560 (+)
Gene ID: Rep_1975_c_1_12
Type:
Location: 11649 - 13748 (-)
Gene ID: Rep_1975_c_1_13
Type: TC
Location: 13864 - 15432 (+)
Gene ID: Rep_1975_c_1_14
Type: pfam
Location: 15480 - 16517 (+)
Gene ID: Rep_1975_c_1_15
Type: pfam
Location: 16508 - 17398 (+)
Gene ID: Rep_1975_c_1_16
Type: TC
Location: 17420 - 19324 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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