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Cluster: Rep_194_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_194_c_6 Rep_194_c_6_322 423936 425249 - GH53
CAZyme Rep_194_c_6 Rep_194_c_6_323 425271 427289 - GH13_6
CAZyme Rep_194_c_6 Rep_194_c_6_324 427389 428480 - GH53
pfam Rep_194_c_6 Rep_194_c_6_325 428577 429947 - SusF_N
pfam Rep_194_c_6 Rep_194_c_6_326 429971 431101 - SusE | SusF_SusE
TC Rep_194_c_6 Rep_194_c_6_327 431171 432793 - 8.A.46.1.1
TC Rep_194_c_6 Rep_194_c_6_328 432807 435908 - 1.B.14.6.1
TF Rep_194_c_6 Rep_194_c_6_329 436171 437199 + LacI
TC Rep_194_c_6 Rep_194_c_6_330 437347 438651 + 2.A.2.6.3
CAZyme Rep_194_c_6 Rep_194_c_6_331 439333 442017 + GH77
CAZyme Rep_194_c_6 Rep_194_c_6_332 442308 444431 + GH97
CAZyme Rep_194_c_6 Rep_194_c_6_333 444449 446362 + GH13_14
Gene ID: Rep_194_c_6_322
Type: CAZyme
Location: 423936 - 425249 (-)
Gene ID: Rep_194_c_6_323
Type: CAZyme
Location: 425271 - 427289 (-)
Gene ID: Rep_194_c_6_324
Type: CAZyme
Location: 427389 - 428480 (-)
Gene ID: Rep_194_c_6_325
Type: pfam
Location: 428577 - 429947 (-)
Gene ID: Rep_194_c_6_326
Type: pfam
Location: 429971 - 431101 (-)
Gene ID: Rep_194_c_6_327
Type: TC
Location: 431171 - 432793 (-)
Gene ID: Rep_194_c_6_328
Type: TC
Location: 432807 - 435908 (-)
Gene ID: Rep_194_c_6_329
Type: TF
Location: 436171 - 437199 (+)
Gene ID: Rep_194_c_6_330
Type: TC
Location: 437347 - 438651 (+)
Gene ID: Rep_194_c_6_331
Type: CAZyme
Location: 439333 - 442017 (+)
Gene ID: Rep_194_c_6_332
Type: CAZyme
Location: 442308 - 444431 (+)
Gene ID: Rep_194_c_6_333
Type: CAZyme
Location: 444449 - 446362 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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