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Cluster: Rep_194_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_194_c_4 Rep_194_c_4_142 205488 206474 + 1.I.1.1.3
CAZyme Rep_194_c_4 Rep_194_c_4_143 206523 208607 - GH42
pfam Rep_194_c_4 Rep_194_c_4_144 208787 209428 + DUF4450
CAZyme Rep_194_c_4 Rep_194_c_4_145 209425 210879 + GH28
NULL(UNKNOWN) Rep_194_c_4 Rep_194_c_4_146 210932 211102 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_194_c_4 Rep_194_c_4_147 211033 211350 - YbjQ_1
CAZyme Rep_194_c_4 Rep_194_c_4_148 211500 213776 - GH78
pfam Rep_194_c_4 Rep_194_c_4_149 213803 214876 - Asn_synthase | tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
NULL(UNKNOWN) Rep_194_c_4 Rep_194_c_4_150 214909 215082 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_194_c_4 Rep_194_c_4_151 215713 217083 + 2.A.66.1.32
Gene ID: Rep_194_c_4_142
Type: TC
Location: 205488 - 206474 (+)
Gene ID: Rep_194_c_4_143
Type: CAZyme
Location: 206523 - 208607 (-)
Gene ID: Rep_194_c_4_144
Type: pfam
Location: 208787 - 209428 (+)
Gene ID: Rep_194_c_4_145
Type: CAZyme
Location: 209425 - 210879 (+)
Gene ID: Rep_194_c_4_146
Type:
Location: 210932 - 211102 (+)
Gene ID: Rep_194_c_4_147
Type: pfam
Location: 211033 - 211350 (-)
Gene ID: Rep_194_c_4_148
Type: CAZyme
Location: 211500 - 213776 (-)
Gene ID: Rep_194_c_4_149
Type: pfam
Location: 213803 - 214876 (-)
Gene ID: Rep_194_c_4_150
Type:
Location: 214909 - 215082 (+)
Gene ID: Rep_194_c_4_151
Type: TC
Location: 215713 - 217083 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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