Cluster: Rep_194_CGC25
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_194
- CGC Family ID: CGCFAM_00544
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_194_c_4 | Rep_194_c_4_39 | 49671 | 50336 | + | 9.B.20.1.4 |
| NULL(UNKNOWN) | Rep_194_c_4 | Rep_194_c_4_40 | 50192 | 50746 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_194_c_4 | Rep_194_c_4_41 | 51089 | 52312 | + | M20.003 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_42 | 52441 | 54612 | - | GH92 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_43 | 54616 | 56070 | - | CE20 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_44 | 56142 | 58424 | - | GH3 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_45 | 58471 | 60735 | - | GH36 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_46 | 60732 | 62696 | - | GH36 |
| TF | Rep_194_c_4 | Rep_194_c_4_47 | 63275 | 67252 | - | HTH_AraC |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_48 | 67676 | 70432 | - | GH92 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_49 | 70422 | 73079 | - | GH2 |
| CAZyme | Rep_194_c_4 | Rep_194_c_4_50 | 73392 | 75722 | - | GH95 |
| pfam | Rep_194_c_4 | Rep_194_c_4_51 | 75933 | 78485 | + | Fasciclin | Fasciclin |
| TC | Rep_194_c_4 | Rep_194_c_4_52 | 78514 | 81807 | + | 1.B.14.6.1 |
Gene ID: Rep_194_c_4_39
Type: TC
Location: 49671 - 50336 (+)
Type: TC
Location: 49671 - 50336 (+)
Gene ID: Rep_194_c_4_40
Type:
Location: 50192 - 50746 (-)
Type:
Location: 50192 - 50746 (-)
Gene ID: Rep_194_c_4_41
Type: peptidase
Location: 51089 - 52312 (+)
Type: peptidase
Location: 51089 - 52312 (+)
Gene ID: Rep_194_c_4_42
Type: CAZyme
Location: 52441 - 54612 (-)
Type: CAZyme
Location: 52441 - 54612 (-)
Gene ID: Rep_194_c_4_43
Type: CAZyme
Location: 54616 - 56070 (-)
Type: CAZyme
Location: 54616 - 56070 (-)
Gene ID: Rep_194_c_4_44
Type: CAZyme
Location: 56142 - 58424 (-)
Type: CAZyme
Location: 56142 - 58424 (-)
Gene ID: Rep_194_c_4_45
Type: CAZyme
Location: 58471 - 60735 (-)
Type: CAZyme
Location: 58471 - 60735 (-)
Gene ID: Rep_194_c_4_46
Type: CAZyme
Location: 60732 - 62696 (-)
Type: CAZyme
Location: 60732 - 62696 (-)
Gene ID: Rep_194_c_4_47
Type: TF
Location: 63275 - 67252 (-)
Type: TF
Location: 63275 - 67252 (-)
Gene ID: Rep_194_c_4_48
Type: CAZyme
Location: 67676 - 70432 (-)
Type: CAZyme
Location: 67676 - 70432 (-)
Gene ID: Rep_194_c_4_49
Type: CAZyme
Location: 70422 - 73079 (-)
Type: CAZyme
Location: 70422 - 73079 (-)
Gene ID: Rep_194_c_4_50
Type: CAZyme
Location: 73392 - 75722 (-)
Type: CAZyme
Location: 73392 - 75722 (-)
Gene ID: Rep_194_c_4_51
Type: pfam
Location: 75933 - 78485 (+)
Type: pfam
Location: 75933 - 78485 (+)
Gene ID: Rep_194_c_4_52
Type: TC
Location: 78514 - 81807 (+)
Type: TC
Location: 78514 - 81807 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella intestinigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.