Cluster: Rep_1939_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1939
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1939_c_1 | Rep_1939_c_1_658 | 690193 | 692625 | + | GT35 |
| CAZyme | Rep_1939_c_1 | Rep_1939_c_1_659 | 692644 | 694581 | + | CBM48 | GH13_9 |
| CAZyme | Rep_1939_c_1 | Rep_1939_c_1_660 | 694736 | 696172 | + | GT5 |
| CAZyme | Rep_1939_c_1 | Rep_1939_c_1_661 | 696244 | 699633 | + | GH13_39 | GH77 |
| pfam | Rep_1939_c_1 | Rep_1939_c_1_662 | 699740 | 701401 | + | AAA_15 | AAA_15 | AAA_21 | OLD-like_TOPRIM |
| TC | Rep_1939_c_1 | Rep_1939_c_1_663 | 701498 | 703630 | + | 3.A.7.7.1 |
Gene ID: Rep_1939_c_1_658
Type: CAZyme
Location: 690193 - 692625 (+)
Type: CAZyme
Location: 690193 - 692625 (+)
Gene ID: Rep_1939_c_1_659
Type: CAZyme
Location: 692644 - 694581 (+)
Type: CAZyme
Location: 692644 - 694581 (+)
Gene ID: Rep_1939_c_1_660
Type: CAZyme
Location: 694736 - 696172 (+)
Type: CAZyme
Location: 694736 - 696172 (+)
Gene ID: Rep_1939_c_1_661
Type: CAZyme
Location: 696244 - 699633 (+)
Type: CAZyme
Location: 696244 - 699633 (+)
Gene ID: Rep_1939_c_1_662
Type: pfam
Location: 699740 - 701401 (+)
Type: pfam
Location: 699740 - 701401 (+)
Gene ID: Rep_1939_c_1_663
Type: TC
Location: 701498 - 703630 (+)
Type: TC
Location: 701498 - 703630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.