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Cluster: Rep_1939_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1939_c_1 Rep_1939_c_1_273 271276 273099 - GH23
pfam Rep_1939_c_1 Rep_1939_c_1_274 273116 274345 - TrbL
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_275 274360 275226 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1939_c_1 Rep_1939_c_1_276 275328 279842 - 1.B.23.1.4
TC Rep_1939_c_1 Rep_1939_c_1_277 279885 282395 - 3.A.7.4.2
pfam Rep_1939_c_1 Rep_1939_c_1_278 282408 282680 - VirB3
pfam Rep_1939_c_1 Rep_1939_c_1_279 282694 283086 - TrbC
TC Rep_1939_c_1 Rep_1939_c_1_280 283119 284120 - 3.A.7.4.1
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_281 284131 284499 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1939_c_1 Rep_1939_c_1_282 284447 286900 - 3.A.7.4.2
TC Rep_1939_c_1 Rep_1939_c_1_283 286944 288368 - 3.A.7.4.2
Gene ID: Rep_1939_c_1_273
Type: CAZyme
Location: 271276 - 273099 (-)
Gene ID: Rep_1939_c_1_274
Type: pfam
Location: 273116 - 274345 (-)
Gene ID: Rep_1939_c_1_275
Type:
Location: 274360 - 275226 (-)
Gene ID: Rep_1939_c_1_276
Type: TC
Location: 275328 - 279842 (-)
Gene ID: Rep_1939_c_1_277
Type: TC
Location: 279885 - 282395 (-)
Gene ID: Rep_1939_c_1_278
Type: pfam
Location: 282408 - 282680 (-)
Gene ID: Rep_1939_c_1_279
Type: pfam
Location: 282694 - 283086 (-)
Gene ID: Rep_1939_c_1_280
Type: TC
Location: 283119 - 284120 (-)
Gene ID: Rep_1939_c_1_281
Type:
Location: 284131 - 284499 (-)
Gene ID: Rep_1939_c_1_282
Type: TC
Location: 284447 - 286900 (-)
Gene ID: Rep_1939_c_1_283
Type: TC
Location: 286944 - 288368 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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