Cluster: Rep_1939_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1939
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1939_c_0 | Rep_1939_c_0_192 | 228859 | 230133 | + | 2.A.103.1.3 |
| TC | Rep_1939_c_0 | Rep_1939_c_0_193 | 230197 | 231465 | + | 2.A.40.1.1 |
| pfam | Rep_1939_c_0 | Rep_1939_c_0_194 | 231524 | 232606 | + | Radical_SAM |
| pfam | Rep_1939_c_0 | Rep_1939_c_0_195 | 232921 | 233892 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | Rep_1939_c_0 | Rep_1939_c_0_196 | 233917 | 234726 | + | CE4 |
Gene ID: Rep_1939_c_0_192
Type: TC
Location: 228859 - 230133 (+)
Type: TC
Location: 228859 - 230133 (+)
Gene ID: Rep_1939_c_0_193
Type: TC
Location: 230197 - 231465 (+)
Type: TC
Location: 230197 - 231465 (+)
Gene ID: Rep_1939_c_0_194
Type: pfam
Location: 231524 - 232606 (+)
Type: pfam
Location: 231524 - 232606 (+)
Gene ID: Rep_1939_c_0_195
Type: pfam
Location: 232921 - 233892 (+)
Type: pfam
Location: 232921 - 233892 (+)
Gene ID: Rep_1939_c_0_196
Type: CAZyme
Location: 233917 - 234726 (+)
Type: CAZyme
Location: 233917 - 234726 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.