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Cluster: Rep_1939_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1939_c_1 Rep_1939_c_1_1607 1689754 1692162 - 8.A.7.1.5
CAZyme Rep_1939_c_1 Rep_1939_c_1_1608 1692487 1694565 + GT51
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_1609 1694799 1694987 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_1610 1695129 1695332 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1939_c_1 Rep_1939_c_1_1611 1695468 1696631 - 2.A.39.1.3
pfam Rep_1939_c_1 Rep_1939_c_1_1612 1696871 1698010 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_1939_c_1 Rep_1939_c_1_1613 1698025 1698729 + 3.A.1.122.2
TC Rep_1939_c_1 Rep_1939_c_1_1614 1698719 1699936 + 3.A.1.122.2
Gene ID: Rep_1939_c_1_1607
Type: TC
Location: 1689754 - 1692162 (-)
Gene ID: Rep_1939_c_1_1608
Type: CAZyme
Location: 1692487 - 1694565 (+)
Gene ID: Rep_1939_c_1_1609
Type:
Location: 1694799 - 1694987 (-)
Gene ID: Rep_1939_c_1_1610
Type:
Location: 1695129 - 1695332 (-)
Gene ID: Rep_1939_c_1_1611
Type: TC
Location: 1695468 - 1696631 (-)
Gene ID: Rep_1939_c_1_1612
Type: pfam
Location: 1696871 - 1698010 (+)
Gene ID: Rep_1939_c_1_1613
Type: TC
Location: 1698025 - 1698729 (+)
Gene ID: Rep_1939_c_1_1614
Type: TC
Location: 1698719 - 1699936 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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