Cluster: Rep_1939_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1939
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1939_c_1 | Rep_1939_c_1_1521 | 1604312 | 1605010 | - | 2.A.109.1.5 |
| pfam | Rep_1939_c_1 | Rep_1939_c_1_1522 | 1605160 | 1606443 | - | Lar_N | LarA_C |
| CAZyme | Rep_1939_c_1 | Rep_1939_c_1_1523 | 1606554 | 1607975 | - | AA4 |
| TC | Rep_1939_c_1 | Rep_1939_c_1_1524 | 1608435 | 1609982 | - | 2.A.14.1.3 |
Gene ID: Rep_1939_c_1_1521
Type: TC
Location: 1604312 - 1605010 (-)
Type: TC
Location: 1604312 - 1605010 (-)
Gene ID: Rep_1939_c_1_1522
Type: pfam
Location: 1605160 - 1606443 (-)
Type: pfam
Location: 1605160 - 1606443 (-)
Gene ID: Rep_1939_c_1_1523
Type: CAZyme
Location: 1606554 - 1607975 (-)
Type: CAZyme
Location: 1606554 - 1607975 (-)
Gene ID: Rep_1939_c_1_1524
Type: TC
Location: 1608435 - 1609982 (-)
Type: TC
Location: 1608435 - 1609982 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.