Cluster: Rep_1939_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1939
- CGC Family ID: CGCFAM_01128
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1939_c_1 | Rep_1939_c_1_1149 | 1198092 | 1199096 | + | 3.A.1.23.1 |
| pfam | Rep_1939_c_1 | Rep_1939_c_1_1150 | 1199109 | 1199918 | + | CbiQ |
| TC | Rep_1939_c_1 | Rep_1939_c_1_1151 | 1199915 | 1200562 | + | 3.A.1.23.7 |
| CAZyme | Rep_1939_c_1 | Rep_1939_c_1_1152 | 1200579 | 1201781 | - | GH73 |
| pfam | Rep_1939_c_1 | Rep_1939_c_1_1153 | 1201771 | 1202172 | - | CGGC |
| pfam | Rep_1939_c_1 | Rep_1939_c_1_1154 | 1202187 | 1202861 | - | CpXC |
| TC | Rep_1939_c_1 | Rep_1939_c_1_1155 | 1202964 | 1203284 | - | 2.A.7.1.4 |
Gene ID: Rep_1939_c_1_1149
Type: TC
Location: 1198092 - 1199096 (+)
Type: TC
Location: 1198092 - 1199096 (+)
Gene ID: Rep_1939_c_1_1150
Type: pfam
Location: 1199109 - 1199918 (+)
Type: pfam
Location: 1199109 - 1199918 (+)
Gene ID: Rep_1939_c_1_1151
Type: TC
Location: 1199915 - 1200562 (+)
Type: TC
Location: 1199915 - 1200562 (+)
Gene ID: Rep_1939_c_1_1152
Type: CAZyme
Location: 1200579 - 1201781 (-)
Type: CAZyme
Location: 1200579 - 1201781 (-)
Gene ID: Rep_1939_c_1_1153
Type: pfam
Location: 1201771 - 1202172 (-)
Type: pfam
Location: 1201771 - 1202172 (-)
Gene ID: Rep_1939_c_1_1154
Type: pfam
Location: 1202187 - 1202861 (-)
Type: pfam
Location: 1202187 - 1202861 (-)
Gene ID: Rep_1939_c_1_1155
Type: TC
Location: 1202964 - 1203284 (-)
Type: TC
Location: 1202964 - 1203284 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.