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Cluster: Rep_1939_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1939_c_1 Rep_1939_c_1_784 837900 839345 + 9.B.18.1.2
pfam Rep_1939_c_1 Rep_1939_c_1_785 839395 840639 + AAA_15 | AAA_21
pfam Rep_1939_c_1 Rep_1939_c_1_786 840646 841296 + HNH
CAZyme Rep_1939_c_1 Rep_1939_c_1_787 841283 842077 + GT111
NULL(UNKNOWN) Rep_1939_c_1 Rep_1939_c_1_788 842121 842927 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1939_c_1 Rep_1939_c_1_789 843110 844234 + GT4
CAZyme Rep_1939_c_1 Rep_1939_c_1_790 844311 845354 + GT9
CAZyme Rep_1939_c_1 Rep_1939_c_1_791 845605 846540 + GT2
Gene ID: Rep_1939_c_1_784
Type: TC
Location: 837900 - 839345 (+)
Gene ID: Rep_1939_c_1_785
Type: pfam
Location: 839395 - 840639 (+)
Gene ID: Rep_1939_c_1_786
Type: pfam
Location: 840646 - 841296 (+)
Gene ID: Rep_1939_c_1_787
Type: CAZyme
Location: 841283 - 842077 (+)
Gene ID: Rep_1939_c_1_788
Type:
Location: 842121 - 842927 (+)
Gene ID: Rep_1939_c_1_789
Type: CAZyme
Location: 843110 - 844234 (+)
Gene ID: Rep_1939_c_1_790
Type: CAZyme
Location: 844311 - 845354 (+)
Gene ID: Rep_1939_c_1_791
Type: CAZyme
Location: 845605 - 846540 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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