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Cluster: Rep_1935_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1935_c_0 Rep_1935_c_0_501 542221 543768 - 2.A.66.2.14
TC Rep_1935_c_0 Rep_1935_c_0_502 543958 545322 + 2.A.38.1.1
TC Rep_1935_c_0 Rep_1935_c_0_503 545325 546773 + 2.A.38.1.3
NULL(UNKNOWN) Rep_1935_c_0 Rep_1935_c_0_504 546820 547170 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1935_c_0 Rep_1935_c_0_505 547112 548269 + 2.A.38.1.3
TC Rep_1935_c_0 Rep_1935_c_0_506 548291 549742 + 2.A.38.1.3
pfam Rep_1935_c_0 Rep_1935_c_0_507 549897 553196 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
TC Rep_1935_c_0 Rep_1935_c_0_508 553189 554772 + 2.A.66.2.14
pfam Rep_1935_c_0 Rep_1935_c_0_509 554800 556293 + TP_methylase | PRA-PH | MazG | MazG
pfam Rep_1935_c_0 Rep_1935_c_0_510 556351 556629 + Bac_DNA_binding | HU-CCDC81_euk_2
CAZyme Rep_1935_c_0 Rep_1935_c_0_511 556772 557926 + GT28
Gene ID: Rep_1935_c_0_501
Type: TC
Location: 542221 - 543768 (-)
Gene ID: Rep_1935_c_0_502
Type: TC
Location: 543958 - 545322 (+)
Gene ID: Rep_1935_c_0_503
Type: TC
Location: 545325 - 546773 (+)
Gene ID: Rep_1935_c_0_504
Type:
Location: 546820 - 547170 (+)
Gene ID: Rep_1935_c_0_505
Type: TC
Location: 547112 - 548269 (+)
Gene ID: Rep_1935_c_0_506
Type: TC
Location: 548291 - 549742 (+)
Gene ID: Rep_1935_c_0_507
Type: pfam
Location: 549897 - 553196 (+)
Gene ID: Rep_1935_c_0_508
Type: TC
Location: 553189 - 554772 (+)
Gene ID: Rep_1935_c_0_509
Type: pfam
Location: 554800 - 556293 (+)
Gene ID: Rep_1935_c_0_510
Type: pfam
Location: 556351 - 556629 (+)
Gene ID: Rep_1935_c_0_511
Type: CAZyme
Location: 556772 - 557926 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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