Cluster: Rep_1935_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1935
- CGC Family ID: CGCFAM_02042
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1935_c_0 | Rep_1935_c_0_1892 | 1997372 | 1998535 | + | 2.A.39.1.3 |
| STP | Rep_1935_c_0 | Rep_1935_c_0_1893 | 1998740 | 1999993 | + | Aminotran_1_2 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1894 | 2000090 | 2000890 | + | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| CAZyme | Rep_1935_c_0 | Rep_1935_c_0_1895 | 2001338 | 2002759 | + | AA4 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1896 | 2003243 | 2004823 | + | 2.A.14.1.2 |
Gene ID: Rep_1935_c_0_1892
Type: TC
Location: 1997372 - 1998535 (+)
Type: TC
Location: 1997372 - 1998535 (+)
Gene ID: Rep_1935_c_0_1893
Type: STP
Location: 1998740 - 1999993 (+)
Type: STP
Location: 1998740 - 1999993 (+)
Gene ID: Rep_1935_c_0_1894
Type: pfam
Location: 2000090 - 2000890 (+)
Type: pfam
Location: 2000090 - 2000890 (+)
Gene ID: Rep_1935_c_0_1895
Type: CAZyme
Location: 2001338 - 2002759 (+)
Type: CAZyme
Location: 2001338 - 2002759 (+)
Gene ID: Rep_1935_c_0_1896
Type: TC
Location: 2003243 - 2004823 (+)
Type: TC
Location: 2003243 - 2004823 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp900549385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.