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Cluster: Rep_1935_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1935_c_0 Rep_1935_c_0_1870 1968745 1970364 - GT83
TC Rep_1935_c_0 Rep_1935_c_0_1871 1970417 1971013 - 9.B.27.2.5
pfam Rep_1935_c_0 Rep_1935_c_0_1872 1971154 1972251 - Acyl_transf_3
TC Rep_1935_c_0 Rep_1935_c_0_1873 1972421 1973812 + 9.B.145.1.2
TC Rep_1935_c_0 Rep_1935_c_0_1874 1974246 1975547 + 1.A.11.1.4
pfam Rep_1935_c_0 Rep_1935_c_0_1875 1975684 1976064 + P-II
pfam Rep_1935_c_0 Rep_1935_c_0_1876 1976099 1977073 - Mem_trans | Mem_trans
TC Rep_1935_c_0 Rep_1935_c_0_1877 1977276 1978844 + 2.A.49.5.5
Gene ID: Rep_1935_c_0_1870
Type: CAZyme
Location: 1968745 - 1970364 (-)
Gene ID: Rep_1935_c_0_1871
Type: TC
Location: 1970417 - 1971013 (-)
Gene ID: Rep_1935_c_0_1872
Type: pfam
Location: 1971154 - 1972251 (-)
Gene ID: Rep_1935_c_0_1873
Type: TC
Location: 1972421 - 1973812 (+)
Gene ID: Rep_1935_c_0_1874
Type: TC
Location: 1974246 - 1975547 (+)
Gene ID: Rep_1935_c_0_1875
Type: pfam
Location: 1975684 - 1976064 (+)
Gene ID: Rep_1935_c_0_1876
Type: pfam
Location: 1976099 - 1977073 (-)
Gene ID: Rep_1935_c_0_1877
Type: TC
Location: 1977276 - 1978844 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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