Cluster: Rep_1935_CGC11
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1935
- CGC Family ID: CGCFAM_06235
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1935_c_0 | Rep_1935_c_0_1383 | 1412297 | 1413988 | - | 9.B.8.4.2 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1384 | 1414137 | 1414583 | - | Usp |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1385 | 1414852 | 1416297 | + | 2.A.111.1.1 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1386 | 1416904 | 1421202 | + | BcrAD_BadFG | BcrAD_BadFG | DUF2229 | DUF2229 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1387 | 1421292 | 1422686 | - | 2.A.40.7.6 |
| peptidase | Rep_1935_c_0 | Rep_1935_c_0_1388 | 1422916 | 1424112 | - | M20.UPD |
| peptidase | Rep_1935_c_0 | Rep_1935_c_0_1389 | 1424116 | 1425054 | - | S66.UPW |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1390 | 1425092 | 1426678 | - | 3.A.1.5.41 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1391 | 1426675 | 1427649 | - | 3.A.1.5.12 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1392 | 1427646 | 1428626 | - | 3.A.1.5.2 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1393 | 1428626 | 1429537 | - | 3.A.1.5.2 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1394 | 1429540 | 1430475 | - | 3.A.1.5.2 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1395 | 1430698 | 1431876 | + | 2.A.1.2.20 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1396 | 1431970 | 1435404 | - | 3.B.1.1.1 |
| NULL(UNKNOWN) | Rep_1935_c_0 | Rep_1935_c_0_1397 | 1435969 | 1436145 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1398 | 1436880 | 1437569 | - | 2.A.64.1.3 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1399 | 1437559 | 1437867 | - | TatA_B_E |
| STP | Rep_1935_c_0 | Rep_1935_c_0_1400 | 1438012 | 1438515 | - | Nitroreductase | Nitroreductase |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1401 | 1439032 | 1440417 | - | 2.A.25.1.4 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1402 | 1440869 | 1441633 | - | SurE |
| CAZyme | Rep_1935_c_0 | Rep_1935_c_0_1403 | 1441644 | 1442894 | - | GT2 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1404 | 1442917 | 1443594 | - | CDP-OH_P_transf |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1405 | 1443591 | 1444229 | - | PS_Dcarbxylase |
| CAZyme | Rep_1935_c_0 | Rep_1935_c_0_1406 | 1444246 | 1444974 | - | GT26 |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1407 | 1445098 | 1447131 | - | DEAD | Helicase_C | tRNA_anti-codon | ResIII | RecG_wedge | RecG_dom3_C |
| pfam | Rep_1935_c_0 | Rep_1935_c_0_1408 | 1447267 | 1447458 | + | Ribosomal_L28 |
| TC | Rep_1935_c_0 | Rep_1935_c_0_1409 | 1447792 | 1449168 | + | 2.A.3.3.22 |
Gene ID: Rep_1935_c_0_1383
Type: TC
Location: 1412297 - 1413988 (-)
Type: TC
Location: 1412297 - 1413988 (-)
Gene ID: Rep_1935_c_0_1384
Type: pfam
Location: 1414137 - 1414583 (-)
Type: pfam
Location: 1414137 - 1414583 (-)
Gene ID: Rep_1935_c_0_1385
Type: TC
Location: 1414852 - 1416297 (+)
Type: TC
Location: 1414852 - 1416297 (+)
Gene ID: Rep_1935_c_0_1386
Type: pfam
Location: 1416904 - 1421202 (+)
Type: pfam
Location: 1416904 - 1421202 (+)
Gene ID: Rep_1935_c_0_1387
Type: TC
Location: 1421292 - 1422686 (-)
Type: TC
Location: 1421292 - 1422686 (-)
Gene ID: Rep_1935_c_0_1388
Type: peptidase
Location: 1422916 - 1424112 (-)
Type: peptidase
Location: 1422916 - 1424112 (-)
Gene ID: Rep_1935_c_0_1389
Type: peptidase
Location: 1424116 - 1425054 (-)
Type: peptidase
Location: 1424116 - 1425054 (-)
Gene ID: Rep_1935_c_0_1390
Type: TC
Location: 1425092 - 1426678 (-)
Type: TC
Location: 1425092 - 1426678 (-)
Gene ID: Rep_1935_c_0_1391
Type: TC
Location: 1426675 - 1427649 (-)
Type: TC
Location: 1426675 - 1427649 (-)
Gene ID: Rep_1935_c_0_1392
Type: TC
Location: 1427646 - 1428626 (-)
Type: TC
Location: 1427646 - 1428626 (-)
Gene ID: Rep_1935_c_0_1393
Type: TC
Location: 1428626 - 1429537 (-)
Type: TC
Location: 1428626 - 1429537 (-)
Gene ID: Rep_1935_c_0_1394
Type: TC
Location: 1429540 - 1430475 (-)
Type: TC
Location: 1429540 - 1430475 (-)
Gene ID: Rep_1935_c_0_1395
Type: TC
Location: 1430698 - 1431876 (+)
Type: TC
Location: 1430698 - 1431876 (+)
Gene ID: Rep_1935_c_0_1396
Type: TC
Location: 1431970 - 1435404 (-)
Type: TC
Location: 1431970 - 1435404 (-)
Gene ID: Rep_1935_c_0_1397
Type:
Location: 1435969 - 1436145 (+)
Type:
Location: 1435969 - 1436145 (+)
Gene ID: Rep_1935_c_0_1398
Type: TC
Location: 1436880 - 1437569 (-)
Type: TC
Location: 1436880 - 1437569 (-)
Gene ID: Rep_1935_c_0_1399
Type: pfam
Location: 1437559 - 1437867 (-)
Type: pfam
Location: 1437559 - 1437867 (-)
Gene ID: Rep_1935_c_0_1400
Type: STP
Location: 1438012 - 1438515 (-)
Type: STP
Location: 1438012 - 1438515 (-)
Gene ID: Rep_1935_c_0_1401
Type: TC
Location: 1439032 - 1440417 (-)
Type: TC
Location: 1439032 - 1440417 (-)
Gene ID: Rep_1935_c_0_1402
Type: pfam
Location: 1440869 - 1441633 (-)
Type: pfam
Location: 1440869 - 1441633 (-)
Gene ID: Rep_1935_c_0_1403
Type: CAZyme
Location: 1441644 - 1442894 (-)
Type: CAZyme
Location: 1441644 - 1442894 (-)
Gene ID: Rep_1935_c_0_1404
Type: pfam
Location: 1442917 - 1443594 (-)
Type: pfam
Location: 1442917 - 1443594 (-)
Gene ID: Rep_1935_c_0_1405
Type: pfam
Location: 1443591 - 1444229 (-)
Type: pfam
Location: 1443591 - 1444229 (-)
Gene ID: Rep_1935_c_0_1406
Type: CAZyme
Location: 1444246 - 1444974 (-)
Type: CAZyme
Location: 1444246 - 1444974 (-)
Gene ID: Rep_1935_c_0_1407
Type: pfam
Location: 1445098 - 1447131 (-)
Type: pfam
Location: 1445098 - 1447131 (-)
Gene ID: Rep_1935_c_0_1408
Type: pfam
Location: 1447267 - 1447458 (+)
Type: pfam
Location: 1447267 - 1447458 (+)
Gene ID: Rep_1935_c_0_1409
Type: TC
Location: 1447792 - 1449168 (+)
Type: TC
Location: 1447792 - 1449168 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Caecibacter
Species
Caecibacter sp900549385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.