Cluster: Rep_185_CGC38
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_185_c_1 | Rep_185_c_1_2690 | 3203122 | 3204903 | + | 3.B.1.1.6 |
| STP | Rep_185_c_1 | Rep_185_c_1_2691 | 3205040 | 3205576 | + | HD |
| STP | Rep_185_c_1 | Rep_185_c_1_2692 | 3205670 | 3206878 | - | Fer4 |
| TC | Rep_185_c_1 | Rep_185_c_1_2693 | 3207321 | 3210179 | + | 1.B.42.1.8 |
| TC | Rep_185_c_1 | Rep_185_c_1_2694 | 3210739 | 3212988 | - | 2.A.37.5.2 |
| peptidase | Rep_185_c_1 | Rep_185_c_1_2695 | 3213122 | 3214345 | - | M20.003 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2696 | 3214831 | 3217548 | - | CBM67 | GH78 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2697 | 3217616 | 3219883 | - | GH139 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2698 | 3220357 | 3222261 | - | GH35 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2699 | 3222578 | 3224695 | - | GH67 |
| TF | Rep_185_c_1 | Rep_185_c_1_2700 | 3224679 | 3228659 | - | HTH_AraC |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2701 | 3228924 | 3231497 | - | GH115 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2702 | 3231760 | 3232914 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_185_c_1 | Rep_185_c_1_2703 | 3232974 | 3234398 | + | 2.A.2.3.2 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2704 | 3234411 | 3235526 | + | GH10 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2705 | 3235657 | 3236622 | + | GH43_1 |
Gene ID: Rep_185_c_1_2690
Type: TC
Location: 3203122 - 3204903 (+)
Type: TC
Location: 3203122 - 3204903 (+)
Gene ID: Rep_185_c_1_2691
Type: STP
Location: 3205040 - 3205576 (+)
Type: STP
Location: 3205040 - 3205576 (+)
Gene ID: Rep_185_c_1_2692
Type: STP
Location: 3205670 - 3206878 (-)
Type: STP
Location: 3205670 - 3206878 (-)
Gene ID: Rep_185_c_1_2693
Type: TC
Location: 3207321 - 3210179 (+)
Type: TC
Location: 3207321 - 3210179 (+)
Gene ID: Rep_185_c_1_2694
Type: TC
Location: 3210739 - 3212988 (-)
Type: TC
Location: 3210739 - 3212988 (-)
Gene ID: Rep_185_c_1_2695
Type: peptidase
Location: 3213122 - 3214345 (-)
Type: peptidase
Location: 3213122 - 3214345 (-)
Gene ID: Rep_185_c_1_2696
Type: CAZyme
Location: 3214831 - 3217548 (-)
Type: CAZyme
Location: 3214831 - 3217548 (-)
Gene ID: Rep_185_c_1_2697
Type: CAZyme
Location: 3217616 - 3219883 (-)
Type: CAZyme
Location: 3217616 - 3219883 (-)
Gene ID: Rep_185_c_1_2698
Type: CAZyme
Location: 3220357 - 3222261 (-)
Type: CAZyme
Location: 3220357 - 3222261 (-)
Gene ID: Rep_185_c_1_2699
Type: CAZyme
Location: 3222578 - 3224695 (-)
Type: CAZyme
Location: 3222578 - 3224695 (-)
Gene ID: Rep_185_c_1_2700
Type: TF
Location: 3224679 - 3228659 (-)
Type: TF
Location: 3224679 - 3228659 (-)
Gene ID: Rep_185_c_1_2701
Type: CAZyme
Location: 3228924 - 3231497 (-)
Type: CAZyme
Location: 3228924 - 3231497 (-)
Gene ID: Rep_185_c_1_2702
Type: pfam
Location: 3231760 - 3232914 (+)
Type: pfam
Location: 3231760 - 3232914 (+)
Gene ID: Rep_185_c_1_2703
Type: TC
Location: 3232974 - 3234398 (+)
Type: TC
Location: 3232974 - 3234398 (+)
Gene ID: Rep_185_c_1_2704
Type: CAZyme
Location: 3234411 - 3235526 (+)
Type: CAZyme
Location: 3234411 - 3235526 (+)
Gene ID: Rep_185_c_1_2705
Type: CAZyme
Location: 3235657 - 3236622 (+)
Type: CAZyme
Location: 3235657 - 3236622 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.