Cluster: Rep_185_CGC37
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_185
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_185_c_1 | Rep_185_c_1_2608 | 3107259 | 3109301 | - | 3.A.25.1.1 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2609 | 3109363 | 3109722 | - | RsfS |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2610 | 3110045 | 3110287 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_185_c_1 | Rep_185_c_1_2611 | 3110504 | 3113908 | + | 1.B.14.6.1 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2612 | 3113934 | 3115976 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2613 | 3116079 | 3117578 | + | CBM91 | GH43_9 |
Gene ID: Rep_185_c_1_2608
Type: TC
Location: 3107259 - 3109301 (-)
Type: TC
Location: 3107259 - 3109301 (-)
Gene ID: Rep_185_c_1_2609
Type: pfam
Location: 3109363 - 3109722 (-)
Type: pfam
Location: 3109363 - 3109722 (-)
Gene ID: Rep_185_c_1_2610
Type:
Location: 3110045 - 3110287 (-)
Type:
Location: 3110045 - 3110287 (-)
Gene ID: Rep_185_c_1_2611
Type: TC
Location: 3110504 - 3113908 (+)
Type: TC
Location: 3110504 - 3113908 (+)
Gene ID: Rep_185_c_1_2612
Type: pfam
Location: 3113934 - 3115976 (+)
Type: pfam
Location: 3113934 - 3115976 (+)
Gene ID: Rep_185_c_1_2613
Type: CAZyme
Location: 3116079 - 3117578 (+)
Type: CAZyme
Location: 3116079 - 3117578 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.