Cluster: Rep_185_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: beta-mannan
- Genome ID: Rep_185
- CGC Family ID: CGCFAM_00129
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2504 | 2984469 | 2986667 | - | GH36 |
| TF | Rep_185_c_1 | Rep_185_c_1_2505 | 2987034 | 2987927 | + | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2506 | 2988281 | 2988493 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2507 | 2988859 | 2989947 | + | GH26 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2508 | 2990027 | 2991199 | + | GH130_1 |
| TC | Rep_185_c_1 | Rep_185_c_1_2509 | 2991227 | 2992630 | + | 2.A.2.3.6 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2510 | 2992638 | 2993804 | + | GlcNAc_2-epim |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2511 | 2993828 | 2995261 | + | CE20 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2512 | 2995563 | 2997887 | + | GH3 |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2513 | 2997978 | 2998070 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2514 | 2998231 | 2999538 | - | GH5_7 |
Gene ID: Rep_185_c_1_2504
Type: CAZyme
Location: 2984469 - 2986667 (-)
Type: CAZyme
Location: 2984469 - 2986667 (-)
Gene ID: Rep_185_c_1_2505
Type: TF
Location: 2987034 - 2987927 (+)
Type: TF
Location: 2987034 - 2987927 (+)
Gene ID: Rep_185_c_1_2506
Type:
Location: 2988281 - 2988493 (-)
Type:
Location: 2988281 - 2988493 (-)
Gene ID: Rep_185_c_1_2507
Type: CAZyme
Location: 2988859 - 2989947 (+)
Type: CAZyme
Location: 2988859 - 2989947 (+)
Gene ID: Rep_185_c_1_2508
Type: CAZyme
Location: 2990027 - 2991199 (+)
Type: CAZyme
Location: 2990027 - 2991199 (+)
Gene ID: Rep_185_c_1_2509
Type: TC
Location: 2991227 - 2992630 (+)
Type: TC
Location: 2991227 - 2992630 (+)
Gene ID: Rep_185_c_1_2510
Type: pfam
Location: 2992638 - 2993804 (+)
Type: pfam
Location: 2992638 - 2993804 (+)
Gene ID: Rep_185_c_1_2511
Type: CAZyme
Location: 2993828 - 2995261 (+)
Type: CAZyme
Location: 2993828 - 2995261 (+)
Gene ID: Rep_185_c_1_2512
Type: CAZyme
Location: 2995563 - 2997887 (+)
Type: CAZyme
Location: 2995563 - 2997887 (+)
Gene ID: Rep_185_c_1_2513
Type:
Location: 2997978 - 2998070 (-)
Type:
Location: 2997978 - 2998070 (-)
Gene ID: Rep_185_c_1_2514
Type: CAZyme
Location: 2998231 - 2999538 (-)
Type: CAZyme
Location: 2998231 - 2999538 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.