Cluster: Rep_185_CGC34
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 10
- Substrate:
- Genome ID: Rep_185
- CGC Family ID: CGCFAM_03865
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_185_c_1 | Rep_185_c_1_2380 | 2841599 | 2842954 | + | 2.A.66.1.37 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2381 | 2843045 | 2844448 | - | CE20 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2382 | 2844586 | 2847741 | - | GH106 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2383 | 2847738 | 2850551 | - | GH2 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2384 | 2850669 | 2853767 | - | GH2 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2385 | 2853938 | 2857981 | - | CBM57 | CBM97 | GH137 | GH2 |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2386 | 2857974 | 2858102 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2387 | 2858148 | 2860790 | - | GH138 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2388 | 2860787 | 2862874 | - | GH78 |
| TC | Rep_185_c_1 | Rep_185_c_1_2389 | 2862858 | 2864231 | - | 2.A.1.1.74 |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2390 | 2864170 | 2864313 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2391 | 2864473 | 2866230 | - | GH141 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2392 | 2866209 | 2868305 | - | GH127 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2393 | 2868502 | 2869167 | - | DUF3826 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2394 | 2869164 | 2870030 | - | AP_endonuc_2 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2395 | 2870239 | 2872146 | - | GH10 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2396 | 2872256 | 2873665 | - | SGBP_B_XBD |
| pfam | Rep_185_c_1 | Rep_185_c_1_2397 | 2873799 | 2875511 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_185_c_1 | Rep_185_c_1_2398 | 2875563 | 2878730 | - | 1.B.14.6.1 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2399 | 2879132 | 2880142 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | Rep_185_c_1 | Rep_185_c_1_2400 | 2880456 | 2882576 | + | 2.A.37.2.5 |
| TC | Rep_185_c_1 | Rep_185_c_1_2401 | 2882713 | 2883396 | + | 3.A.1.125.1 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2402 | 2883551 | 2884390 | + | S1_2 | CvfB_WH |
| pfam | Rep_185_c_1 | Rep_185_c_1_2403 | 2884640 | 2885212 | + | Hexapep | Hexapep_2 |
| TC | Rep_185_c_1 | Rep_185_c_1_2404 | 2885901 | 2887829 | + | 1.A.33.1.2 |
Gene ID: Rep_185_c_1_2380
Type: TC
Location: 2841599 - 2842954 (+)
Type: TC
Location: 2841599 - 2842954 (+)
Gene ID: Rep_185_c_1_2381
Type: CAZyme
Location: 2843045 - 2844448 (-)
Type: CAZyme
Location: 2843045 - 2844448 (-)
Gene ID: Rep_185_c_1_2382
Type: CAZyme
Location: 2844586 - 2847741 (-)
Type: CAZyme
Location: 2844586 - 2847741 (-)
Gene ID: Rep_185_c_1_2383
Type: CAZyme
Location: 2847738 - 2850551 (-)
Type: CAZyme
Location: 2847738 - 2850551 (-)
Gene ID: Rep_185_c_1_2384
Type: CAZyme
Location: 2850669 - 2853767 (-)
Type: CAZyme
Location: 2850669 - 2853767 (-)
Gene ID: Rep_185_c_1_2385
Type: CAZyme
Location: 2853938 - 2857981 (-)
Type: CAZyme
Location: 2853938 - 2857981 (-)
Gene ID: Rep_185_c_1_2386
Type:
Location: 2857974 - 2858102 (-)
Type:
Location: 2857974 - 2858102 (-)
Gene ID: Rep_185_c_1_2387
Type: CAZyme
Location: 2858148 - 2860790 (-)
Type: CAZyme
Location: 2858148 - 2860790 (-)
Gene ID: Rep_185_c_1_2388
Type: CAZyme
Location: 2860787 - 2862874 (-)
Type: CAZyme
Location: 2860787 - 2862874 (-)
Gene ID: Rep_185_c_1_2389
Type: TC
Location: 2862858 - 2864231 (-)
Type: TC
Location: 2862858 - 2864231 (-)
Gene ID: Rep_185_c_1_2390
Type:
Location: 2864170 - 2864313 (-)
Type:
Location: 2864170 - 2864313 (-)
Gene ID: Rep_185_c_1_2391
Type: CAZyme
Location: 2864473 - 2866230 (-)
Type: CAZyme
Location: 2864473 - 2866230 (-)
Gene ID: Rep_185_c_1_2392
Type: CAZyme
Location: 2866209 - 2868305 (-)
Type: CAZyme
Location: 2866209 - 2868305 (-)
Gene ID: Rep_185_c_1_2393
Type: pfam
Location: 2868502 - 2869167 (-)
Type: pfam
Location: 2868502 - 2869167 (-)
Gene ID: Rep_185_c_1_2394
Type: pfam
Location: 2869164 - 2870030 (-)
Type: pfam
Location: 2869164 - 2870030 (-)
Gene ID: Rep_185_c_1_2395
Type: CAZyme
Location: 2870239 - 2872146 (-)
Type: CAZyme
Location: 2870239 - 2872146 (-)
Gene ID: Rep_185_c_1_2396
Type: pfam
Location: 2872256 - 2873665 (-)
Type: pfam
Location: 2872256 - 2873665 (-)
Gene ID: Rep_185_c_1_2397
Type: pfam
Location: 2873799 - 2875511 (-)
Type: pfam
Location: 2873799 - 2875511 (-)
Gene ID: Rep_185_c_1_2398
Type: TC
Location: 2875563 - 2878730 (-)
Type: TC
Location: 2875563 - 2878730 (-)
Gene ID: Rep_185_c_1_2399
Type: pfam
Location: 2879132 - 2880142 (-)
Type: pfam
Location: 2879132 - 2880142 (-)
Gene ID: Rep_185_c_1_2400
Type: TC
Location: 2880456 - 2882576 (+)
Type: TC
Location: 2880456 - 2882576 (+)
Gene ID: Rep_185_c_1_2401
Type: TC
Location: 2882713 - 2883396 (+)
Type: TC
Location: 2882713 - 2883396 (+)
Gene ID: Rep_185_c_1_2402
Type: pfam
Location: 2883551 - 2884390 (+)
Type: pfam
Location: 2883551 - 2884390 (+)
Gene ID: Rep_185_c_1_2403
Type: pfam
Location: 2884640 - 2885212 (+)
Type: pfam
Location: 2884640 - 2885212 (+)
Gene ID: Rep_185_c_1_2404
Type: TC
Location: 2885901 - 2887829 (+)
Type: TC
Location: 2885901 - 2887829 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.