Cluster: Rep_185_CGC29
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_185_c_1 | Rep_185_c_1_2009 | 2364052 | 2365650 | - | 2.A.21.3.19 |
| STP | Rep_185_c_1 | Rep_185_c_1_2010 | 2365861 | 2368956 | - | B12-binding | B12-binding_2 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2011 | 2369102 | 2371345 | - | GH31_3 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2012 | 2371463 | 2373253 | - | GH141 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2013 | 2373725 | 2374741 | - | ADH_zinc_N | AlaDh_PNT_C | ADH_N | Glu_dehyd_C |
| TC | Rep_185_c_1 | Rep_185_c_1_2014 | 2374790 | 2376067 | - | 2.A.1.7.1 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2015 | 2376116 | 2377039 | - | Amidohydro_2 |
| TC | Rep_185_c_1 | Rep_185_c_1_2016 | 2377076 | 2377978 | - | 8.A.5.1.6 |
| TC | Rep_185_c_1 | Rep_185_c_1_2017 | 2378144 | 2380099 | - | 3.A.18.1.1 |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2018 | 2380200 | 2380472 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_185_c_1 | Rep_185_c_1_2019 | 2380683 | 2383862 | + | 1.B.14.6.1 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2020 | 2383975 | 2385513 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_185_c_1 | Rep_185_c_1_2021 | 2385537 | 2387414 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2022 | 2387624 | 2388712 | + | GH16_3 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2023 | 2388854 | 2391091 | + | GH3 |
| CAZyme | Rep_185_c_1 | Rep_185_c_1_2024 | 2391297 | 2393558 | + | GH3 |
| TC | Rep_185_c_1 | Rep_185_c_1_2025 | 2393813 | 2394187 | + | 1.A.43.1.13 |
| pfam | Rep_185_c_1 | Rep_185_c_1_2026 | 2394289 | 2395461 | + | AhpC-TSA | Thioredoxin_8 | DUF4369 |
| TC | Rep_185_c_1 | Rep_185_c_1_2027 | 2395662 | 2398970 | + | 1.B.14.6.3 |
Gene ID: Rep_185_c_1_2009
Type: TC
Location: 2364052 - 2365650 (-)
Type: TC
Location: 2364052 - 2365650 (-)
Gene ID: Rep_185_c_1_2010
Type: STP
Location: 2365861 - 2368956 (-)
Type: STP
Location: 2365861 - 2368956 (-)
Gene ID: Rep_185_c_1_2011
Type: CAZyme
Location: 2369102 - 2371345 (-)
Type: CAZyme
Location: 2369102 - 2371345 (-)
Gene ID: Rep_185_c_1_2012
Type: CAZyme
Location: 2371463 - 2373253 (-)
Type: CAZyme
Location: 2371463 - 2373253 (-)
Gene ID: Rep_185_c_1_2013
Type: pfam
Location: 2373725 - 2374741 (-)
Type: pfam
Location: 2373725 - 2374741 (-)
Gene ID: Rep_185_c_1_2014
Type: TC
Location: 2374790 - 2376067 (-)
Type: TC
Location: 2374790 - 2376067 (-)
Gene ID: Rep_185_c_1_2015
Type: pfam
Location: 2376116 - 2377039 (-)
Type: pfam
Location: 2376116 - 2377039 (-)
Gene ID: Rep_185_c_1_2016
Type: TC
Location: 2377076 - 2377978 (-)
Type: TC
Location: 2377076 - 2377978 (-)
Gene ID: Rep_185_c_1_2017
Type: TC
Location: 2378144 - 2380099 (-)
Type: TC
Location: 2378144 - 2380099 (-)
Gene ID: Rep_185_c_1_2018
Type:
Location: 2380200 - 2380472 (-)
Type:
Location: 2380200 - 2380472 (-)
Gene ID: Rep_185_c_1_2019
Type: TC
Location: 2380683 - 2383862 (+)
Type: TC
Location: 2380683 - 2383862 (+)
Gene ID: Rep_185_c_1_2020
Type: pfam
Location: 2383975 - 2385513 (+)
Type: pfam
Location: 2383975 - 2385513 (+)
Gene ID: Rep_185_c_1_2021
Type:
Location: 2385537 - 2387414 (+)
Type:
Location: 2385537 - 2387414 (+)
Gene ID: Rep_185_c_1_2022
Type: CAZyme
Location: 2387624 - 2388712 (+)
Type: CAZyme
Location: 2387624 - 2388712 (+)
Gene ID: Rep_185_c_1_2023
Type: CAZyme
Location: 2388854 - 2391091 (+)
Type: CAZyme
Location: 2388854 - 2391091 (+)
Gene ID: Rep_185_c_1_2024
Type: CAZyme
Location: 2391297 - 2393558 (+)
Type: CAZyme
Location: 2391297 - 2393558 (+)
Gene ID: Rep_185_c_1_2025
Type: TC
Location: 2393813 - 2394187 (+)
Type: TC
Location: 2393813 - 2394187 (+)
Gene ID: Rep_185_c_1_2026
Type: pfam
Location: 2394289 - 2395461 (+)
Type: pfam
Location: 2394289 - 2395461 (+)
Gene ID: Rep_185_c_1_2027
Type: TC
Location: 2395662 - 2398970 (+)
Type: TC
Location: 2395662 - 2398970 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.