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Cluster: Rep_185_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_185_c_1 Rep_185_c_1_863 1000087 1001571 + 3.A.1.109.19
pfam Rep_185_c_1 Rep_185_c_1_864 1001590 1001748 + FeoB_associated
pfam Rep_185_c_1 Rep_185_c_1_865 1001833 1004193 - UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
CAZyme Rep_185_c_1 Rep_185_c_1_866 1004330 1005025 - GT51
TC Rep_185_c_1 Rep_185_c_1_867 1005214 1005921 - 9.B.186.1.3
pfam Rep_185_c_1 Rep_185_c_1_868 1006907 1008388 + tRNA-synt_2b | HGTP_anticodon | ProRS-C_1
STP Rep_185_c_1 Rep_185_c_1_869 1008513 1009214 + Pribosyltran
CAZyme Rep_185_c_1 Rep_185_c_1_870 1009321 1010346 - GT2
Gene ID: Rep_185_c_1_863
Type: TC
Location: 1000087 - 1001571 (+)
Gene ID: Rep_185_c_1_864
Type: pfam
Location: 1001590 - 1001748 (+)
Gene ID: Rep_185_c_1_865
Type: pfam
Location: 1001833 - 1004193 (-)
Gene ID: Rep_185_c_1_866
Type: CAZyme
Location: 1004330 - 1005025 (-)
Gene ID: Rep_185_c_1_867
Type: TC
Location: 1005214 - 1005921 (-)
Gene ID: Rep_185_c_1_868
Type: pfam
Location: 1006907 - 1008388 (+)
Gene ID: Rep_185_c_1_869
Type: STP
Location: 1008513 - 1009214 (+)
Gene ID: Rep_185_c_1_870
Type: CAZyme
Location: 1009321 - 1010346 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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