Cluster: Rep_177_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_177
- CGC Family ID: CGCFAM_00618
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_177_c_0 | Rep_177_c_0_1952 | 2423883 | 2425421 | + | 2.A.66.1.40 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1953 | 2425424 | 2426269 | + | GT2 |
| NULL(UNKNOWN) | Rep_177_c_0 | Rep_177_c_0_1954 | 2426277 | 2427044 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_177_c_0 | Rep_177_c_0_1955 | 2427181 | 2427468 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1956 | 2427458 | 2428474 | + | GT8 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1957 | 2428516 | 2429499 | + | GT2 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1958 | 2429496 | 2430506 | + | GT4 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1959 | 2430514 | 2431464 | + | GT2 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1960 | 2431476 | 2432432 | + | GT92 |
| pfam | Rep_177_c_0 | Rep_177_c_0_1961 | 2432429 | 2433037 | + | Hexapep | Hexapep_2 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1962 | 2433039 | 2434328 | + | GT4 |
Gene ID: Rep_177_c_0_1952
Type: TC
Location: 2423883 - 2425421 (+)
Type: TC
Location: 2423883 - 2425421 (+)
Gene ID: Rep_177_c_0_1953
Type: CAZyme
Location: 2425424 - 2426269 (+)
Type: CAZyme
Location: 2425424 - 2426269 (+)
Gene ID: Rep_177_c_0_1954
Type:
Location: 2426277 - 2427044 (+)
Type:
Location: 2426277 - 2427044 (+)
Gene ID: Rep_177_c_0_1955
Type:
Location: 2427181 - 2427468 (+)
Type:
Location: 2427181 - 2427468 (+)
Gene ID: Rep_177_c_0_1956
Type: CAZyme
Location: 2427458 - 2428474 (+)
Type: CAZyme
Location: 2427458 - 2428474 (+)
Gene ID: Rep_177_c_0_1957
Type: CAZyme
Location: 2428516 - 2429499 (+)
Type: CAZyme
Location: 2428516 - 2429499 (+)
Gene ID: Rep_177_c_0_1958
Type: CAZyme
Location: 2429496 - 2430506 (+)
Type: CAZyme
Location: 2429496 - 2430506 (+)
Gene ID: Rep_177_c_0_1959
Type: CAZyme
Location: 2430514 - 2431464 (+)
Type: CAZyme
Location: 2430514 - 2431464 (+)
Gene ID: Rep_177_c_0_1960
Type: CAZyme
Location: 2431476 - 2432432 (+)
Type: CAZyme
Location: 2431476 - 2432432 (+)
Gene ID: Rep_177_c_0_1961
Type: pfam
Location: 2432429 - 2433037 (+)
Type: pfam
Location: 2432429 - 2433037 (+)
Gene ID: Rep_177_c_0_1962
Type: CAZyme
Location: 2433039 - 2434328 (+)
Type: CAZyme
Location: 2433039 - 2434328 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella lascolaii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.