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Cluster: Rep_177_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_177_c_0 Rep_177_c_0_1396 1713525 1715756 - GH3
CAZyme Rep_177_c_0 Rep_177_c_0_1397 1715886 1717085 - GH5_46
CAZyme Rep_177_c_0 Rep_177_c_0_1398 1717218 1718300 - GH16_3
NULL(UNKNOWN) Rep_177_c_0 Rep_177_c_0_1399 1718569 1720437 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_177_c_0 Rep_177_c_0_1400 1720461 1721999 - SusD_RagB | SusD-like_3
TC Rep_177_c_0 Rep_177_c_0_1401 1722100 1725273 - 1.B.14.6.1
pfam Rep_177_c_0 Rep_177_c_0_1402 1726535 1727074 - Lysine_decarbox | LDcluster4
TC Rep_177_c_0 Rep_177_c_0_1403 1727317 1729167 + 3.A.18.1.1
Gene ID: Rep_177_c_0_1396
Type: CAZyme
Location: 1713525 - 1715756 (-)
Gene ID: Rep_177_c_0_1397
Type: CAZyme
Location: 1715886 - 1717085 (-)
Gene ID: Rep_177_c_0_1398
Type: CAZyme
Location: 1717218 - 1718300 (-)
Gene ID: Rep_177_c_0_1399
Type:
Location: 1718569 - 1720437 (-)
Gene ID: Rep_177_c_0_1400
Type: pfam
Location: 1720461 - 1721999 (-)
Gene ID: Rep_177_c_0_1401
Type: TC
Location: 1722100 - 1725273 (-)
Gene ID: Rep_177_c_0_1402
Type: pfam
Location: 1726535 - 1727074 (-)
Gene ID: Rep_177_c_0_1403
Type: TC
Location: 1727317 - 1729167 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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