Cluster: Rep_177_CGC20
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_177
- CGC Family ID: CGCFAM_05973
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1269 | 1491536 | 1492465 | + | CBM67 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1270 | 1492691 | 1496653 | + | CBM6 | GH76 |
| CAZyme | Rep_177_c_0 | Rep_177_c_0_1271 | 1497262 | 1499223 | + | GH36 |
| peptidase | Rep_177_c_0 | Rep_177_c_0_1272 | 1499418 | 1501082 | - | C10.UPW |
| pfam | Rep_177_c_0 | Rep_177_c_0_1273 | 1501184 | 1502098 | - | Calx-beta |
| TC | Rep_177_c_0 | Rep_177_c_0_1274 | 1502127 | 1503650 | - | 8.A.46.3.1 |
| TC | Rep_177_c_0 | Rep_177_c_0_1275 | 1503690 | 1506701 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_177_c_0 | Rep_177_c_0_1276 | 1507121 | 1507267 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_177_c_0 | Rep_177_c_0_1277 | 1507369 | 1508358 | - | Phage_integrase | Phage_int_SAM_1 | Phage_int_SAM_5 |
| TC | Rep_177_c_0 | Rep_177_c_0_1278 | 1508867 | 1511833 | + | 1.B.14.6.1 |
| TC | Rep_177_c_0 | Rep_177_c_0_1279 | 1511854 | 1513317 | + | 8.A.46.3.2 |
Gene ID: Rep_177_c_0_1269
Type: CAZyme
Location: 1491536 - 1492465 (+)
Type: CAZyme
Location: 1491536 - 1492465 (+)
Gene ID: Rep_177_c_0_1270
Type: CAZyme
Location: 1492691 - 1496653 (+)
Type: CAZyme
Location: 1492691 - 1496653 (+)
Gene ID: Rep_177_c_0_1271
Type: CAZyme
Location: 1497262 - 1499223 (+)
Type: CAZyme
Location: 1497262 - 1499223 (+)
Gene ID: Rep_177_c_0_1272
Type: peptidase
Location: 1499418 - 1501082 (-)
Type: peptidase
Location: 1499418 - 1501082 (-)
Gene ID: Rep_177_c_0_1273
Type: pfam
Location: 1501184 - 1502098 (-)
Type: pfam
Location: 1501184 - 1502098 (-)
Gene ID: Rep_177_c_0_1274
Type: TC
Location: 1502127 - 1503650 (-)
Type: TC
Location: 1502127 - 1503650 (-)
Gene ID: Rep_177_c_0_1275
Type: TC
Location: 1503690 - 1506701 (-)
Type: TC
Location: 1503690 - 1506701 (-)
Gene ID: Rep_177_c_0_1276
Type:
Location: 1507121 - 1507267 (+)
Type:
Location: 1507121 - 1507267 (+)
Gene ID: Rep_177_c_0_1277
Type: pfam
Location: 1507369 - 1508358 (-)
Type: pfam
Location: 1507369 - 1508358 (-)
Gene ID: Rep_177_c_0_1278
Type: TC
Location: 1508867 - 1511833 (+)
Type: TC
Location: 1508867 - 1511833 (+)
Gene ID: Rep_177_c_0_1279
Type: TC
Location: 1511854 - 1513317 (+)
Type: TC
Location: 1511854 - 1513317 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella lascolaii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.