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Cluster: Rep_171_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_171_c_1 Rep_171_c_1_240 294228 296309 + 3.A.16.1.1
pfam Rep_171_c_1 Rep_171_c_1_241 296379 297227 + CTP_transf_1
TC Rep_171_c_1 Rep_171_c_1_242 297366 298376 - 2.A.115.1.2
CAZyme Rep_171_c_1 Rep_171_c_1_243 298799 300832 + GH127
CAZyme Rep_171_c_1 Rep_171_c_1_244 301041 302303 + GH154
CAZyme Rep_171_c_1 Rep_171_c_1_245 302349 304205 + PL33_1
CAZyme Rep_171_c_1 Rep_171_c_1_246 304385 306718 + GH35
CAZyme Rep_171_c_1 Rep_171_c_1_247 306869 308290 - GH28
TC Rep_171_c_1 Rep_171_c_1_248 308378 316051 - 9.A.25.1.1
Gene ID: Rep_171_c_1_240
Type: TC
Location: 294228 - 296309 (+)
Gene ID: Rep_171_c_1_241
Type: pfam
Location: 296379 - 297227 (+)
Gene ID: Rep_171_c_1_242
Type: TC
Location: 297366 - 298376 (-)
Gene ID: Rep_171_c_1_243
Type: CAZyme
Location: 298799 - 300832 (+)
Gene ID: Rep_171_c_1_244
Type: CAZyme
Location: 301041 - 302303 (+)
Gene ID: Rep_171_c_1_245
Type: CAZyme
Location: 302349 - 304205 (+)
Gene ID: Rep_171_c_1_246
Type: CAZyme
Location: 304385 - 306718 (+)
Gene ID: Rep_171_c_1_247
Type: CAZyme
Location: 306869 - 308290 (-)
Gene ID: Rep_171_c_1_248
Type: TC
Location: 308378 - 316051 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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