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Cluster: Rep_171_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_171_c_1 Rep_171_c_1_140 174305 175339 + 2.A.7.6.1
CAZyme Rep_171_c_1 Rep_171_c_1_141 175514 177439 - GH13_46
CAZyme Rep_171_c_1 Rep_171_c_1_142 177528 179480 - GH13_14
CAZyme Rep_171_c_1 Rep_171_c_1_143 179502 181640 - GH97
CAZyme Rep_171_c_1 Rep_171_c_1_144 181670 184348 - GH77
TC Rep_171_c_1 Rep_171_c_1_145 184447 185763 - 2.A.2.6.2
TF Rep_171_c_1 Rep_171_c_1_146 185955 186986 - LacI
TC Rep_171_c_1 Rep_171_c_1_147 188237 191260 + 1.B.14.6.1
TC Rep_171_c_1 Rep_171_c_1_148 191285 192955 + 8.A.46.1.1
pfam Rep_171_c_1 Rep_171_c_1_149 192977 194170 + SusE
NULL(UNKNOWN) Rep_171_c_1 Rep_171_c_1_150 194191 195588 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_171_c_1 Rep_171_c_1_151 195835 197829 + GH13_6
CAZyme Rep_171_c_1 Rep_171_c_1_152 197840 199111 + GH53
Gene ID: Rep_171_c_1_140
Type: TC
Location: 174305 - 175339 (+)
Gene ID: Rep_171_c_1_141
Type: CAZyme
Location: 175514 - 177439 (-)
Gene ID: Rep_171_c_1_142
Type: CAZyme
Location: 177528 - 179480 (-)
Gene ID: Rep_171_c_1_143
Type: CAZyme
Location: 179502 - 181640 (-)
Gene ID: Rep_171_c_1_144
Type: CAZyme
Location: 181670 - 184348 (-)
Gene ID: Rep_171_c_1_145
Type: TC
Location: 184447 - 185763 (-)
Gene ID: Rep_171_c_1_146
Type: TF
Location: 185955 - 186986 (-)
Gene ID: Rep_171_c_1_147
Type: TC
Location: 188237 - 191260 (+)
Gene ID: Rep_171_c_1_148
Type: TC
Location: 191285 - 192955 (+)
Gene ID: Rep_171_c_1_149
Type: pfam
Location: 192977 - 194170 (+)
Gene ID: Rep_171_c_1_150
Type:
Location: 194191 - 195588 (+)
Gene ID: Rep_171_c_1_151
Type: CAZyme
Location: 195835 - 197829 (+)
Gene ID: Rep_171_c_1_152
Type: CAZyme
Location: 197840 - 199111 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_171_c_1_146 vegetarian > omnivore 1.01950 0.04408

🧭 Explore Read Mapping of CGC

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