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Cluster: Rep_171_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_171_c_1 Rep_171_c_1_39 38206 40746 + GH95
CAZyme Rep_171_c_1 Rep_171_c_1_40 40971 43430 + GH106
CAZyme Rep_171_c_1 Rep_171_c_1_41 43485 45158 + GH29
CAZyme Rep_171_c_1 Rep_171_c_1_42 45226 47727 - GH31_15
CAZyme Rep_171_c_1 Rep_171_c_1_43 47761 49911 - GH97
CAZyme Rep_171_c_1 Rep_171_c_1_44 49992 51419 - GH27
pfam Rep_171_c_1 Rep_171_c_1_45 51666 52865 - SusF_SusE | SusF_SusE | SusF_SusE
pfam Rep_171_c_1 Rep_171_c_1_46 52961 54697 - SusD_RagB | SusD-like_3
TC Rep_171_c_1 Rep_171_c_1_47 54723 57719 - 1.B.14.6.1
Gene ID: Rep_171_c_1_39
Type: CAZyme
Location: 38206 - 40746 (+)
Gene ID: Rep_171_c_1_40
Type: CAZyme
Location: 40971 - 43430 (+)
Gene ID: Rep_171_c_1_41
Type: CAZyme
Location: 43485 - 45158 (+)
Gene ID: Rep_171_c_1_42
Type: CAZyme
Location: 45226 - 47727 (-)
Gene ID: Rep_171_c_1_43
Type: CAZyme
Location: 47761 - 49911 (-)
Gene ID: Rep_171_c_1_44
Type: CAZyme
Location: 49992 - 51419 (-)
Gene ID: Rep_171_c_1_45
Type: pfam
Location: 51666 - 52865 (-)
Gene ID: Rep_171_c_1_46
Type: pfam
Location: 52961 - 54697 (-)
Gene ID: Rep_171_c_1_47
Type: TC
Location: 54723 - 57719 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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