Cluster: Rep_171_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_171
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_171_c_2 | Rep_171_c_2_660 | 806613 | 807545 | - | GH43_1 |
| TC | Rep_171_c_2 | Rep_171_c_2_661 | 807883 | 809289 | - | 2.A.2.3.2 |
| STP | Rep_171_c_2 | Rep_171_c_2_662 | 809371 | 809958 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_171_c_2 | Rep_171_c_2_663 | 809971 | 811086 | - | GH10 |
| NULL(UNKNOWN) | Rep_171_c_2 | Rep_171_c_2_664 | 811296 | 811445 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_171_c_2 | Rep_171_c_2_665 | 811476 | 812612 | + | GH43_28 |
| CAZyme | Rep_171_c_2 | Rep_171_c_2_666 | 812576 | 813193 | + | CBM91 |
| CAZyme | Rep_171_c_2 | Rep_171_c_2_667 | 813212 | 815914 | + | CBM6 | GH43_29 |
| CAZyme | Rep_171_c_2 | Rep_171_c_2_668 | 815950 | 816939 | + | GH43_29 |
| NULL(UNKNOWN) | Rep_171_c_2 | Rep_171_c_2_669 | 817334 | 817834 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_171_c_2 | Rep_171_c_2_670 | 817843 | 819576 | - | GHL10 | GHL10 |
| TC | Rep_171_c_2 | Rep_171_c_2_671 | 819631 | 821103 | + | 2.A.114.1.4 |
Gene ID: Rep_171_c_2_660
Type: CAZyme
Location: 806613 - 807545 (-)
Type: CAZyme
Location: 806613 - 807545 (-)
Gene ID: Rep_171_c_2_661
Type: TC
Location: 807883 - 809289 (-)
Type: TC
Location: 807883 - 809289 (-)
Gene ID: Rep_171_c_2_662
Type: STP
Location: 809371 - 809958 (-)
Type: STP
Location: 809371 - 809958 (-)
Gene ID: Rep_171_c_2_663
Type: CAZyme
Location: 809971 - 811086 (-)
Type: CAZyme
Location: 809971 - 811086 (-)
Gene ID: Rep_171_c_2_664
Type:
Location: 811296 - 811445 (-)
Type:
Location: 811296 - 811445 (-)
Gene ID: Rep_171_c_2_665
Type: CAZyme
Location: 811476 - 812612 (+)
Type: CAZyme
Location: 811476 - 812612 (+)
Gene ID: Rep_171_c_2_666
Type: CAZyme
Location: 812576 - 813193 (+)
Type: CAZyme
Location: 812576 - 813193 (+)
Gene ID: Rep_171_c_2_667
Type: CAZyme
Location: 813212 - 815914 (+)
Type: CAZyme
Location: 813212 - 815914 (+)
Gene ID: Rep_171_c_2_668
Type: CAZyme
Location: 815950 - 816939 (+)
Type: CAZyme
Location: 815950 - 816939 (+)
Gene ID: Rep_171_c_2_669
Type:
Location: 817334 - 817834 (-)
Type:
Location: 817334 - 817834 (-)
Gene ID: Rep_171_c_2_670
Type: pfam
Location: 817843 - 819576 (-)
Type: pfam
Location: 817843 - 819576 (-)
Gene ID: Rep_171_c_2_671
Type: TC
Location: 819631 - 821103 (+)
Type: TC
Location: 819631 - 821103 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900553965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.