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Cluster: Rep_171_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_171_c_2 Rep_171_c_2_515 634028 635068 - 2.A.98.1.3
TC Rep_171_c_2 Rep_171_c_2_516 635125 635700 - 2.A.107.1.2
TC Rep_171_c_2 Rep_171_c_2_517 636468 639593 - 2.A.6.2.22
TC Rep_171_c_2 Rep_171_c_2_518 639599 640720 - 2.A.6.2.4
NULL(UNKNOWN) Rep_171_c_2 Rep_171_c_2_519 640758 641042 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_171_c_2 Rep_171_c_2_520 641060 642091 + 9.B.33.1.1
TF Rep_171_c_2 Rep_171_c_2_521 642085 642792 + LytTR
pfam Rep_171_c_2 Rep_171_c_2_522 643210 643770 + RuvC
TC Rep_171_c_2 Rep_171_c_2_523 643755 645239 + 3.A.1.30.1
NULL(UNKNOWN) Rep_171_c_2 Rep_171_c_2_524 645290 645784 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_171_c_2 Rep_171_c_2_525 645996 647177 - DUF6057
CAZyme Rep_171_c_2 Rep_171_c_2_526 647266 649350 - GH13_8
Gene ID: Rep_171_c_2_515
Type: TC
Location: 634028 - 635068 (-)
Gene ID: Rep_171_c_2_516
Type: TC
Location: 635125 - 635700 (-)
Gene ID: Rep_171_c_2_517
Type: TC
Location: 636468 - 639593 (-)
Gene ID: Rep_171_c_2_518
Type: TC
Location: 639599 - 640720 (-)
Gene ID: Rep_171_c_2_519
Type:
Location: 640758 - 641042 (+)
Gene ID: Rep_171_c_2_520
Type: TC
Location: 641060 - 642091 (+)
Gene ID: Rep_171_c_2_521
Type: TF
Location: 642085 - 642792 (+)
Gene ID: Rep_171_c_2_522
Type: pfam
Location: 643210 - 643770 (+)
Gene ID: Rep_171_c_2_523
Type: TC
Location: 643755 - 645239 (+)
Gene ID: Rep_171_c_2_524
Type:
Location: 645290 - 645784 (+)
Gene ID: Rep_171_c_2_525
Type: pfam
Location: 645996 - 647177 (-)
Gene ID: Rep_171_c_2_526
Type: CAZyme
Location: 647266 - 649350 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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