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Cluster: Rep_171_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_171_c_2 Rep_171_c_2_352 432164 433852 - CBM91 | GH43_12
CAZyme Rep_171_c_2 Rep_171_c_2_353 433849 435423 - CBM91 | GH43_10
CAZyme Rep_171_c_2 Rep_171_c_2_354 435778 437505 - GH10
pfam Rep_171_c_2 Rep_171_c_2_355 437522 438577 - BT_3987-like_N | DUF5627
pfam Rep_171_c_2 Rep_171_c_2_356 438654 440432 - SusD_RagB | SusD-like_3
TC Rep_171_c_2 Rep_171_c_2_357 440446 443241 - 1.B.14.6.1
pfam Rep_171_c_2 Rep_171_c_2_358 443340 445271 - SusD_RagB | SusD-like_3
TC Rep_171_c_2 Rep_171_c_2_359 445396 448536 - 1.B.14.6.1
pfam Rep_171_c_2 Rep_171_c_2_360 448992 450266 + AAA_14 | DUF4143
CAZyme Rep_171_c_2 Rep_171_c_2_361 450468 454076 - CBM91 | GH43_10 | GH5_21
Gene ID: Rep_171_c_2_352
Type: CAZyme
Location: 432164 - 433852 (-)
Gene ID: Rep_171_c_2_353
Type: CAZyme
Location: 433849 - 435423 (-)
Gene ID: Rep_171_c_2_354
Type: CAZyme
Location: 435778 - 437505 (-)
Gene ID: Rep_171_c_2_355
Type: pfam
Location: 437522 - 438577 (-)
Gene ID: Rep_171_c_2_356
Type: pfam
Location: 438654 - 440432 (-)
Gene ID: Rep_171_c_2_357
Type: TC
Location: 440446 - 443241 (-)
Gene ID: Rep_171_c_2_358
Type: pfam
Location: 443340 - 445271 (-)
Gene ID: Rep_171_c_2_359
Type: TC
Location: 445396 - 448536 (-)
Gene ID: Rep_171_c_2_360
Type: pfam
Location: 448992 - 450266 (+)
Gene ID: Rep_171_c_2_361
Type: CAZyme
Location: 450468 - 454076 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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