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Cluster: Rep_171_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_171_c_0 Rep_171_c_0_193 242397 243527 - GT4
pfam Rep_171_c_0 Rep_171_c_0_194 243628 244230 - Hexapep | Hexapep_2 | Hexapep_2
NULL(UNKNOWN) Rep_171_c_0 Rep_171_c_0_195 244307 245449 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_171_c_0 Rep_171_c_0_196 245620 246528 - GT2
CAZyme Rep_171_c_0 Rep_171_c_0_197 246620 247795 + GT4
CAZyme Rep_171_c_0 Rep_171_c_0_198 247797 248852 + GT2
CAZyme Rep_171_c_0 Rep_171_c_0_199 248866 249717 + GT2
CAZyme Rep_171_c_0 Rep_171_c_0_200 249717 250916 + GT4
CAZyme Rep_171_c_0 Rep_171_c_0_201 251034 254057 - CBM6 | GH3
CAZyme Rep_171_c_0 Rep_171_c_0_202 254383 255822 - PL9
pfam Rep_171_c_0 Rep_171_c_0_203 256120 257328 - LRR_5 | LRR_5
CAZyme Rep_171_c_0 Rep_171_c_0_204 257938 259059 + GH105
pfam Rep_171_c_0 Rep_171_c_0_205 259333 259719 + DUF1573 | HYDIN_VesB_CFA65-like_Ig
TC Rep_171_c_0 Rep_171_c_0_206 260841 262142 - 9.B.168.1.2
peptidase Rep_171_c_0 Rep_171_c_0_207 262402 264012 + C26.964
TC Rep_171_c_0 Rep_171_c_0_208 264005 265897 + 2.A.9.3.1
peptidase Rep_171_c_0 Rep_171_c_0_209 266043 268217 + S09.UPC
TC Rep_171_c_0 Rep_171_c_0_210 268275 269888 + 2.A.1.53.5
Gene ID: Rep_171_c_0_193
Type: CAZyme
Location: 242397 - 243527 (-)
Gene ID: Rep_171_c_0_194
Type: pfam
Location: 243628 - 244230 (-)
Gene ID: Rep_171_c_0_195
Type:
Location: 244307 - 245449 (+)
Gene ID: Rep_171_c_0_196
Type: CAZyme
Location: 245620 - 246528 (-)
Gene ID: Rep_171_c_0_197
Type: CAZyme
Location: 246620 - 247795 (+)
Gene ID: Rep_171_c_0_198
Type: CAZyme
Location: 247797 - 248852 (+)
Gene ID: Rep_171_c_0_199
Type: CAZyme
Location: 248866 - 249717 (+)
Gene ID: Rep_171_c_0_200
Type: CAZyme
Location: 249717 - 250916 (+)
Gene ID: Rep_171_c_0_201
Type: CAZyme
Location: 251034 - 254057 (-)
Gene ID: Rep_171_c_0_202
Type: CAZyme
Location: 254383 - 255822 (-)
Gene ID: Rep_171_c_0_203
Type: pfam
Location: 256120 - 257328 (-)
Gene ID: Rep_171_c_0_204
Type: CAZyme
Location: 257938 - 259059 (+)
Gene ID: Rep_171_c_0_205
Type: pfam
Location: 259333 - 259719 (+)
Gene ID: Rep_171_c_0_206
Type: TC
Location: 260841 - 262142 (-)
Gene ID: Rep_171_c_0_207
Type: peptidase
Location: 262402 - 264012 (+)
Gene ID: Rep_171_c_0_208
Type: TC
Location: 264005 - 265897 (+)
Gene ID: Rep_171_c_0_209
Type: peptidase
Location: 266043 - 268217 (+)
Gene ID: Rep_171_c_0_210
Type: TC
Location: 268275 - 269888 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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