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Cluster: Rep_171_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_171_c_1 Rep_171_c_1_403 533558 534727 + 1.B.6.1.6
CAZyme Rep_171_c_1 Rep_171_c_1_404 535097 538099 + GH2
pfam Rep_171_c_1 Rep_171_c_1_405 538271 539182 + ORF6N
CAZyme Rep_171_c_1 Rep_171_c_1_406 539321 542167 - GH2
CAZyme Rep_171_c_1 Rep_171_c_1_407 542161 544245 - GH35
pfam Rep_171_c_1 Rep_171_c_1_408 545430 546746 + Fic
CAZyme Rep_171_c_1 Rep_171_c_1_409 547180 548742 - CE4
pfam Rep_171_c_1 Rep_171_c_1_410 548797 549543 - Lipase_GDSL_lke
pfam Rep_171_c_1 Rep_171_c_1_411 556569 557510 - Metallophos
TC Rep_171_c_1 Rep_171_c_1_412 557570 560422 - 1.B.14.12.1
Gene ID: Rep_171_c_1_403
Type: TC
Location: 533558 - 534727 (+)
Gene ID: Rep_171_c_1_404
Type: CAZyme
Location: 535097 - 538099 (+)
Gene ID: Rep_171_c_1_405
Type: pfam
Location: 538271 - 539182 (+)
Gene ID: Rep_171_c_1_406
Type: CAZyme
Location: 539321 - 542167 (-)
Gene ID: Rep_171_c_1_407
Type: CAZyme
Location: 542161 - 544245 (-)
Gene ID: Rep_171_c_1_408
Type: pfam
Location: 545430 - 546746 (+)
Gene ID: Rep_171_c_1_409
Type: CAZyme
Location: 547180 - 548742 (-)
Gene ID: Rep_171_c_1_410
Type: pfam
Location: 548797 - 549543 (-)
Gene ID: Rep_171_c_1_411
Type: pfam
Location: 556569 - 557510 (-)
Gene ID: Rep_171_c_1_412
Type: TC
Location: 557570 - 560422 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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