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Cluster: Rep_171_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_171_c_1 Rep_171_c_1_268 340544 341770 - GT19
pfam Rep_171_c_1 Rep_171_c_1_269 342027 342800 - SurE
NULL(UNKNOWN) Rep_171_c_1 Rep_171_c_1_270 343643 343765 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_171_c_1 Rep_171_c_1_271 343795 344556 + 8.A.3.2.3
pfam Rep_171_c_1 Rep_171_c_1_272 344558 345487 + ParBc | HTH_ParB | ParB_dimer
pfam Rep_171_c_1 Rep_171_c_1_273 345484 346356 + DUF5683
CAZyme Rep_171_c_1 Rep_171_c_1_274 346410 347741 + GH23
STP Rep_171_c_1 Rep_171_c_1_275 347938 350208 + HD
CAZyme Rep_171_c_1 Rep_171_c_1_276 350352 351329 + CE8
Gene ID: Rep_171_c_1_268
Type: CAZyme
Location: 340544 - 341770 (-)
Gene ID: Rep_171_c_1_269
Type: pfam
Location: 342027 - 342800 (-)
Gene ID: Rep_171_c_1_270
Type:
Location: 343643 - 343765 (+)
Gene ID: Rep_171_c_1_271
Type: TC
Location: 343795 - 344556 (+)
Gene ID: Rep_171_c_1_272
Type: pfam
Location: 344558 - 345487 (+)
Gene ID: Rep_171_c_1_273
Type: pfam
Location: 345484 - 346356 (+)
Gene ID: Rep_171_c_1_274
Type: CAZyme
Location: 346410 - 347741 (+)
Gene ID: Rep_171_c_1_275
Type: STP
Location: 347938 - 350208 (+)
Gene ID: Rep_171_c_1_276
Type: CAZyme
Location: 350352 - 351329 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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