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Cluster: Rep_171_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_171_c_0 Rep_171_c_0_55 70500 71660 + GT4
pfam Rep_171_c_0 Rep_171_c_0_56 71675 72826 + Glyco_tran_WbsX
pfam Rep_171_c_0 Rep_171_c_0_57 72839 73765 + C5-epim_C
CAZyme Rep_171_c_0 Rep_171_c_0_58 73779 74819 + GT4
CAZyme Rep_171_c_0 Rep_171_c_0_59 74983 75798 - GH16_3
pfam Rep_171_c_0 Rep_171_c_0_60 75824 76816 - Acyl_transf_3
CAZyme Rep_171_c_0 Rep_171_c_0_61 77198 78019 + GT2
TC Rep_171_c_0 Rep_171_c_0_62 78089 78664 - 9.B.18.1.3
Gene ID: Rep_171_c_0_55
Type: CAZyme
Location: 70500 - 71660 (+)
Gene ID: Rep_171_c_0_56
Type: pfam
Location: 71675 - 72826 (+)
Gene ID: Rep_171_c_0_57
Type: pfam
Location: 72839 - 73765 (+)
Gene ID: Rep_171_c_0_58
Type: CAZyme
Location: 73779 - 74819 (+)
Gene ID: Rep_171_c_0_59
Type: CAZyme
Location: 74983 - 75798 (-)
Gene ID: Rep_171_c_0_60
Type: pfam
Location: 75824 - 76816 (-)
Gene ID: Rep_171_c_0_61
Type: CAZyme
Location: 77198 - 78019 (+)
Gene ID: Rep_171_c_0_62
Type: TC
Location: 78089 - 78664 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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