Cluster: Rep_166_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_166
- CGC Family ID: CGCFAM_04639
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_166_c_45 | Rep_166_c_45_1 | 574 | 2304 | + | PL1_2 |
| CAZyme | Rep_166_c_45 | Rep_166_c_45_2 | 2493 | 4553 | + | GH127 |
| NULL(UNKNOWN) | Rep_166_c_45 | Rep_166_c_45_3 | 4814 | 5524 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_166_c_45 | Rep_166_c_45_4 | 5502 | 5945 | - | PepSY_like | PepSY_like |
| CAZyme | Rep_166_c_45 | Rep_166_c_45_5 | 6202 | 7140 | - | CBM50 |
| pfam | Rep_166_c_45 | Rep_166_c_45_6 | 7505 | 8098 | + | AICARFT_IMPCHas | MGS |
| TC | Rep_166_c_45 | Rep_166_c_45_7 | 8113 | 9135 | + | 9.B.157.1.1 |
Gene ID: Rep_166_c_45_1
Type: CAZyme
Location: 574 - 2304 (+)
Type: CAZyme
Location: 574 - 2304 (+)
Gene ID: Rep_166_c_45_2
Type: CAZyme
Location: 2493 - 4553 (+)
Type: CAZyme
Location: 2493 - 4553 (+)
Gene ID: Rep_166_c_45_3
Type:
Location: 4814 - 5524 (+)
Type:
Location: 4814 - 5524 (+)
Gene ID: Rep_166_c_45_4
Type: pfam
Location: 5502 - 5945 (-)
Type: pfam
Location: 5502 - 5945 (-)
Gene ID: Rep_166_c_45_5
Type: CAZyme
Location: 6202 - 7140 (-)
Type: CAZyme
Location: 6202 - 7140 (-)
Gene ID: Rep_166_c_45_6
Type: pfam
Location: 7505 - 8098 (+)
Type: pfam
Location: 7505 - 8098 (+)
Gene ID: Rep_166_c_45_7
Type: TC
Location: 8113 - 9135 (+)
Type: TC
Location: 8113 - 9135 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_166_c_45_6 | vegetarian > vegan | 1.46177 | 0.02224 |