Cluster: Rep_166_CGC29
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: xylan/beta-glucan
- Genome ID: Rep_166
- CGC Family ID: CGCFAM_00116
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_166_c_190 | Rep_166_c_190_1 | 467 | 2635 | - | GH10 |
| pfam | Rep_166_c_190 | Rep_166_c_190_2 | 2651 | 3631 | - | BT_3987-like_N | DUF5627 |
| pfam | Rep_166_c_190 | Rep_166_c_190_3 | 3665 | 5470 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_166_c_190 | Rep_166_c_190_4 | 5495 | 8311 | - | 1.B.14.6.1 |
| pfam | Rep_166_c_190 | Rep_166_c_190_5 | 8365 | 10353 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_166_c_190 | Rep_166_c_190_6 | 10368 | 13538 | - | 1.B.14.6.1 |
| CAZyme | Rep_166_c_190 | Rep_166_c_190_7 | 13788 | 15407 | - | CBM91 | GH43_10 |
Gene ID: Rep_166_c_190_1
Type: CAZyme
Location: 467 - 2635 (-)
Type: CAZyme
Location: 467 - 2635 (-)
Gene ID: Rep_166_c_190_2
Type: pfam
Location: 2651 - 3631 (-)
Type: pfam
Location: 2651 - 3631 (-)
Gene ID: Rep_166_c_190_3
Type: pfam
Location: 3665 - 5470 (-)
Type: pfam
Location: 3665 - 5470 (-)
Gene ID: Rep_166_c_190_4
Type: TC
Location: 5495 - 8311 (-)
Type: TC
Location: 5495 - 8311 (-)
Gene ID: Rep_166_c_190_5
Type: pfam
Location: 8365 - 10353 (-)
Type: pfam
Location: 8365 - 10353 (-)
Gene ID: Rep_166_c_190_6
Type: TC
Location: 10368 - 13538 (-)
Type: TC
Location: 10368 - 13538 (-)
Gene ID: Rep_166_c_190_7
Type: CAZyme
Location: 13788 - 15407 (-)
Type: CAZyme
Location: 13788 - 15407 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.