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Cluster: Rep_166_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_166_c_9 Rep_166_c_9_2 1746 2939 - GH5_4
TF Rep_166_c_9 Rep_166_c_9_3 2947 3843 - HTH_AraC | HTH_AraC
pfam Rep_166_c_9 Rep_166_c_9_4 4016 5191 - GlcNAc_2-epim
TC Rep_166_c_9 Rep_166_c_9_5 5241 6584 - 2.A.2.3.4
CAZyme Rep_166_c_9 Rep_166_c_9_6 6795 7961 - GH130_1
CAZyme Rep_166_c_9 Rep_166_c_9_7 7985 9067 - GH26
CAZyme Rep_166_c_9 Rep_166_c_9_8 9077 10420 - CE7
CAZyme Rep_166_c_9 Rep_166_c_9_9 10487 11740 - GH5_7
Gene ID: Rep_166_c_9_2
Type: CAZyme
Location: 1746 - 2939 (-)
Gene ID: Rep_166_c_9_3
Type: TF
Location: 2947 - 3843 (-)
Gene ID: Rep_166_c_9_4
Type: pfam
Location: 4016 - 5191 (-)
Gene ID: Rep_166_c_9_5
Type: TC
Location: 5241 - 6584 (-)
Gene ID: Rep_166_c_9_6
Type: CAZyme
Location: 6795 - 7961 (-)
Gene ID: Rep_166_c_9_7
Type: CAZyme
Location: 7985 - 9067 (-)
Gene ID: Rep_166_c_9_8
Type: CAZyme
Location: 9077 - 10420 (-)
Gene ID: Rep_166_c_9_9
Type: CAZyme
Location: 10487 - 11740 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_166_c_9_5 vegetarian > vegan 1.27881 0.02224

🧭 Explore Read Mapping of CGC

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