Cluster: Rep_166_CGC10
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_166
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_166_c_55 | Rep_166_c_55_10 | 8728 | 10239 | - | GH30_3 |
| pfam | Rep_166_c_55 | Rep_166_c_55_11 | 10302 | 11804 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_166_c_55 | Rep_166_c_55_12 | 11818 | 14796 | - | 1.B.14.6.1 |
| pfam | Rep_166_c_55 | Rep_166_c_55_13 | 15136 | 16698 | + | DUF6377 |
| NULL(UNKNOWN) | Rep_166_c_55 | Rep_166_c_55_14 | 16775 | 17008 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_166_c_55 | Rep_166_c_55_15 | 17051 | 19339 | - | GH3 |
| CAZyme | Rep_166_c_55 | Rep_166_c_55_16 | 19576 | 21819 | - | GH3 |
| CAZyme | Rep_166_c_55 | Rep_166_c_55_17 | 21907 | 23139 | - | GH5_46 |
| CAZyme | Rep_166_c_55 | Rep_166_c_55_18 | 23277 | 24419 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_166_c_55 | Rep_166_c_55_19 | 24530 | 26449 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_166_c_55 | Rep_166_c_55_20 | 26475 | 27989 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_166_c_55 | Rep_166_c_55_21 | 28016 | 31231 | - | 1.B.14.6.1 |
| pfam | Rep_166_c_55 | Rep_166_c_55_22 | 31585 | 33147 | - | PDDEXK_9 | AAA-ATPase_like |
| pfam | Rep_166_c_55 | Rep_166_c_55_23 | 33292 | 34944 | - | DUF6377 |
| CAZyme | Rep_166_c_55 | Rep_166_c_55_24 | 35088 | 36971 | - | GH13_14 |
| CAZyme | Rep_166_c_55 | Rep_166_c_55_25 | 37006 | 39132 | - | GH97 |
Gene ID: Rep_166_c_55_10
Type: CAZyme
Location: 8728 - 10239 (-)
Type: CAZyme
Location: 8728 - 10239 (-)
Gene ID: Rep_166_c_55_11
Type: pfam
Location: 10302 - 11804 (-)
Type: pfam
Location: 10302 - 11804 (-)
Gene ID: Rep_166_c_55_12
Type: TC
Location: 11818 - 14796 (-)
Type: TC
Location: 11818 - 14796 (-)
Gene ID: Rep_166_c_55_13
Type: pfam
Location: 15136 - 16698 (+)
Type: pfam
Location: 15136 - 16698 (+)
Gene ID: Rep_166_c_55_14
Type:
Location: 16775 - 17008 (-)
Type:
Location: 16775 - 17008 (-)
Gene ID: Rep_166_c_55_15
Type: CAZyme
Location: 17051 - 19339 (-)
Type: CAZyme
Location: 17051 - 19339 (-)
Gene ID: Rep_166_c_55_16
Type: CAZyme
Location: 19576 - 21819 (-)
Type: CAZyme
Location: 19576 - 21819 (-)
Gene ID: Rep_166_c_55_17
Type: CAZyme
Location: 21907 - 23139 (-)
Type: CAZyme
Location: 21907 - 23139 (-)
Gene ID: Rep_166_c_55_18
Type: CAZyme
Location: 23277 - 24419 (-)
Type: CAZyme
Location: 23277 - 24419 (-)
Gene ID: Rep_166_c_55_19
Type:
Location: 24530 - 26449 (-)
Type:
Location: 24530 - 26449 (-)
Gene ID: Rep_166_c_55_20
Type: pfam
Location: 26475 - 27989 (-)
Type: pfam
Location: 26475 - 27989 (-)
Gene ID: Rep_166_c_55_21
Type: TC
Location: 28016 - 31231 (-)
Type: TC
Location: 28016 - 31231 (-)
Gene ID: Rep_166_c_55_22
Type: pfam
Location: 31585 - 33147 (-)
Type: pfam
Location: 31585 - 33147 (-)
Gene ID: Rep_166_c_55_23
Type: pfam
Location: 33292 - 34944 (-)
Type: pfam
Location: 33292 - 34944 (-)
Gene ID: Rep_166_c_55_24
Type: CAZyme
Location: 35088 - 36971 (-)
Type: CAZyme
Location: 35088 - 36971 (-)
Gene ID: Rep_166_c_55_25
Type: CAZyme
Location: 37006 - 39132 (-)
Type: CAZyme
Location: 37006 - 39132 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.