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Cluster: Rep_165_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_165_c_18 Rep_165_c_18_37 34775 36202 + 9.B.18.1.1
pfam Rep_165_c_18 Rep_165_c_18_38 36209 37228 + YceG
CAZyme Rep_165_c_18 Rep_165_c_18_39 37301 39871 - GH3
CAZyme Rep_165_c_18 Rep_165_c_18_40 39944 41404 - GH28
CAZyme Rep_165_c_18 Rep_165_c_18_41 41422 43260 - PL1_2
pfam Rep_165_c_18 Rep_165_c_18_42 43361 45361 - BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 | Nlig-Ia
TC Rep_165_c_18 Rep_165_c_18_43 45398 46879 - 3.A.1.120.6
TC Rep_165_c_18 Rep_165_c_18_44 47064 48530 - 2.A.114.1.4
Gene ID: Rep_165_c_18_37
Type: TC
Location: 34775 - 36202 (+)
Gene ID: Rep_165_c_18_38
Type: pfam
Location: 36209 - 37228 (+)
Gene ID: Rep_165_c_18_39
Type: CAZyme
Location: 37301 - 39871 (-)
Gene ID: Rep_165_c_18_40
Type: CAZyme
Location: 39944 - 41404 (-)
Gene ID: Rep_165_c_18_41
Type: CAZyme
Location: 41422 - 43260 (-)
Gene ID: Rep_165_c_18_42
Type: pfam
Location: 43361 - 45361 (-)
Gene ID: Rep_165_c_18_43
Type: TC
Location: 45398 - 46879 (-)
Gene ID: Rep_165_c_18_44
Type: TC
Location: 47064 - 48530 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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