Cluster: Rep_165_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: beta-glucan
- Genome ID: Rep_165
- CGC Family ID: CGCFAM_00062
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_165_c_0 | Rep_165_c_0_175 | 220359 | 222092 | - | 8.A.46.1.1 |
| TC | Rep_165_c_0 | Rep_165_c_0_176 | 222113 | 225217 | - | 1.B.14.6.1 |
| TF | Rep_165_c_0 | Rep_165_c_0_177 | 225650 | 226693 | + | LacI |
| TC | Rep_165_c_0 | Rep_165_c_0_178 | 226772 | 228142 | + | 2.A.2.6.3 |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_179 | 228146 | 230821 | + | GH77 |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_180 | 230840 | 232966 | + | GH97 |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_181 | 233001 | 234884 | + | GH13_14 |
| pfam | Rep_165_c_0 | Rep_165_c_0_182 | 235026 | 236684 | + | DUF6377 |
| pfam | Rep_165_c_0 | Rep_165_c_0_183 | 237112 | 238509 | + | DUF5016 | DUF5125 | DUF5121 |
| TC | Rep_165_c_0 | Rep_165_c_0_184 | 238547 | 241741 | + | 1.B.14.6.1 |
| pfam | Rep_165_c_0 | Rep_165_c_0_185 | 241767 | 243743 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_186 | 243921 | 244919 | + | GH18 |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_187 | 244943 | 247369 | + | GH88 | PL38 |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_188 | 247393 | 250053 | + | CBM57 | GH2 |
| pfam | Rep_165_c_0 | Rep_165_c_0_189 | 250113 | 251570 | + | ThuA | ThuA |
| CAZyme | Rep_165_c_0 | Rep_165_c_0_190 | 251636 | 254065 | + | GH2 |
Gene ID: Rep_165_c_0_175
Type: TC
Location: 220359 - 222092 (-)
Type: TC
Location: 220359 - 222092 (-)
Gene ID: Rep_165_c_0_176
Type: TC
Location: 222113 - 225217 (-)
Type: TC
Location: 222113 - 225217 (-)
Gene ID: Rep_165_c_0_177
Type: TF
Location: 225650 - 226693 (+)
Type: TF
Location: 225650 - 226693 (+)
Gene ID: Rep_165_c_0_178
Type: TC
Location: 226772 - 228142 (+)
Type: TC
Location: 226772 - 228142 (+)
Gene ID: Rep_165_c_0_179
Type: CAZyme
Location: 228146 - 230821 (+)
Type: CAZyme
Location: 228146 - 230821 (+)
Gene ID: Rep_165_c_0_180
Type: CAZyme
Location: 230840 - 232966 (+)
Type: CAZyme
Location: 230840 - 232966 (+)
Gene ID: Rep_165_c_0_181
Type: CAZyme
Location: 233001 - 234884 (+)
Type: CAZyme
Location: 233001 - 234884 (+)
Gene ID: Rep_165_c_0_182
Type: pfam
Location: 235026 - 236684 (+)
Type: pfam
Location: 235026 - 236684 (+)
Gene ID: Rep_165_c_0_183
Type: pfam
Location: 237112 - 238509 (+)
Type: pfam
Location: 237112 - 238509 (+)
Gene ID: Rep_165_c_0_184
Type: TC
Location: 238547 - 241741 (+)
Type: TC
Location: 238547 - 241741 (+)
Gene ID: Rep_165_c_0_185
Type: pfam
Location: 241767 - 243743 (+)
Type: pfam
Location: 241767 - 243743 (+)
Gene ID: Rep_165_c_0_186
Type: CAZyme
Location: 243921 - 244919 (+)
Type: CAZyme
Location: 243921 - 244919 (+)
Gene ID: Rep_165_c_0_187
Type: CAZyme
Location: 244943 - 247369 (+)
Type: CAZyme
Location: 244943 - 247369 (+)
Gene ID: Rep_165_c_0_188
Type: CAZyme
Location: 247393 - 250053 (+)
Type: CAZyme
Location: 247393 - 250053 (+)
Gene ID: Rep_165_c_0_189
Type: pfam
Location: 250113 - 251570 (+)
Type: pfam
Location: 250113 - 251570 (+)
Gene ID: Rep_165_c_0_190
Type: CAZyme
Location: 251636 - 254065 (+)
Type: CAZyme
Location: 251636 - 254065 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900770395
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.