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Cluster: Rep_165_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_165_c_14 Rep_165_c_14_42 45032 46978 + GH133
CAZyme Rep_165_c_14 Rep_165_c_14_43 46997 48265 + GT4
CAZyme Rep_165_c_14 Rep_165_c_14_44 48334 49725 + GH57
pfam Rep_165_c_14 Rep_165_c_14_45 50231 50827 + MMR_HSR1 | FeoB_N
TC Rep_165_c_14 Rep_165_c_14_46 50831 52630 + 3.A.1.120.6
pfam Rep_165_c_14 Rep_165_c_14_47 52640 53260 + Toprim | RecR_ZnF | Toprim_4 | RecR_C | RecR_HhH
NULL(UNKNOWN) Rep_165_c_14 Rep_165_c_14_48 53268 53681 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_165_c_14 Rep_165_c_14_49 53665 54834 + GT2
Gene ID: Rep_165_c_14_42
Type: CAZyme
Location: 45032 - 46978 (+)
Gene ID: Rep_165_c_14_43
Type: CAZyme
Location: 46997 - 48265 (+)
Gene ID: Rep_165_c_14_44
Type: CAZyme
Location: 48334 - 49725 (+)
Gene ID: Rep_165_c_14_45
Type: pfam
Location: 50231 - 50827 (+)
Gene ID: Rep_165_c_14_46
Type: TC
Location: 50831 - 52630 (+)
Gene ID: Rep_165_c_14_47
Type: pfam
Location: 52640 - 53260 (+)
Gene ID: Rep_165_c_14_48
Type:
Location: 53268 - 53681 (+)
Gene ID: Rep_165_c_14_49
Type: CAZyme
Location: 53665 - 54834 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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