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Cluster: Rep_165_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_165_c_10 Rep_165_c_10_38 46069 49098 + CBM89 | GH10
TC Rep_165_c_10 Rep_165_c_10_39 49488 50795 + 1.B.3.1.7
peptidase Rep_165_c_10 Rep_165_c_10_40 50847 52145 + M75.UPW
pfam Rep_165_c_10 Rep_165_c_10_41 52179 53930 + DHOR
TC Rep_165_c_10 Rep_165_c_10_42 54119 56155 + 9.B.14.3.1
TC Rep_165_c_10 Rep_165_c_10_43 56407 57765 - 1.B.17.3.5
TC Rep_165_c_10 Rep_165_c_10_44 57766 60879 - 2.A.6.2.22
TC Rep_165_c_10 Rep_165_c_10_45 60876 61961 - 2.A.6.2.46
Gene ID: Rep_165_c_10_38
Type: CAZyme
Location: 46069 - 49098 (+)
Gene ID: Rep_165_c_10_39
Type: TC
Location: 49488 - 50795 (+)
Gene ID: Rep_165_c_10_40
Type: peptidase
Location: 50847 - 52145 (+)
Gene ID: Rep_165_c_10_41
Type: pfam
Location: 52179 - 53930 (+)
Gene ID: Rep_165_c_10_42
Type: TC
Location: 54119 - 56155 (+)
Gene ID: Rep_165_c_10_43
Type: TC
Location: 56407 - 57765 (-)
Gene ID: Rep_165_c_10_44
Type: TC
Location: 57766 - 60879 (-)
Gene ID: Rep_165_c_10_45
Type: TC
Location: 60876 - 61961 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_165_c_10_43 vegan > omnivore 1.51683 0.01579
Rep_165_c_10_44 vegan > omnivore 1.11023 0.02300
Rep_165_c_10_45 vegan > omnivore 1.15352 0.02300

🧭 Explore Read Mapping of CGC

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