dbCAN Logo

Cluster: Rep_1398_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1398_c_17 Rep_1398_c_17_15 15521 16897 + 4.A.1.2.1
CAZyme Rep_1398_c_17 Rep_1398_c_17_16 17526 24884 + CBM51 | CBM51 | CBM51
STP Rep_1398_c_17 Rep_1398_c_17_17 25169 26140 + PfkB
CAZyme Rep_1398_c_17 Rep_1398_c_17_18 26143 27570 + GH32
TC Rep_1398_c_17 Rep_1398_c_17_19 27995 29329 + 1.A.26.1.2
TF Rep_1398_c_17 Rep_1398_c_17_20 29437 30114 + Trans_reg_C
TC Rep_1398_c_17 Rep_1398_c_17_21 30104 31513 + 2.A.21.9.1
NULL(UNKNOWN) Rep_1398_c_17 Rep_1398_c_17_22 32895 33713 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1398_c_17 Rep_1398_c_17_23 33767 37549 + GH136
Gene ID: Rep_1398_c_17_15
Type: TC
Location: 15521 - 16897 (+)
Gene ID: Rep_1398_c_17_16
Type: CAZyme
Location: 17526 - 24884 (+)
Gene ID: Rep_1398_c_17_17
Type: STP
Location: 25169 - 26140 (+)
Gene ID: Rep_1398_c_17_18
Type: CAZyme
Location: 26143 - 27570 (+)
Gene ID: Rep_1398_c_17_19
Type: TC
Location: 27995 - 29329 (+)
Gene ID: Rep_1398_c_17_20
Type: TF
Location: 29437 - 30114 (+)
Gene ID: Rep_1398_c_17_21
Type: TC
Location: 30104 - 31513 (+)
Gene ID: Rep_1398_c_17_22
Type:
Location: 32895 - 33713 (+)
Gene ID: Rep_1398_c_17_23
Type: CAZyme
Location: 33767 - 37549 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1398_c_17_17 vegetarian > vegan 1.39343 0.03778

🧭 Explore Read Mapping of CGC

← Back to Cluster List