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Cluster: Rep_1398_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1398_c_184 Rep_1398_c_184_25 29382 30710 - GH13_31
pfam Rep_1398_c_184 Rep_1398_c_184_26 30906 31208 - DUF1905 | OmdA
pfam Rep_1398_c_184 Rep_1398_c_184_27 31214 31360 - DUF1905
TC Rep_1398_c_184 Rep_1398_c_184_28 31438 32307 - 2.A.7.2.1
pfam Rep_1398_c_184 Rep_1398_c_184_29 32438 34084 - GH3 | GH3_M | GH3_C
TC Rep_1398_c_184 Rep_1398_c_184_30 34219 35388 - 2.A.33.1.1
NULL(UNKNOWN) Rep_1398_c_184 Rep_1398_c_184_31 35545 35772 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1398_c_184 Rep_1398_c_184_32 35838 37769 - 4.A.2.1.4
Gene ID: Rep_1398_c_184_25
Type: CAZyme
Location: 29382 - 30710 (-)
Gene ID: Rep_1398_c_184_26
Type: pfam
Location: 30906 - 31208 (-)
Gene ID: Rep_1398_c_184_27
Type: pfam
Location: 31214 - 31360 (-)
Gene ID: Rep_1398_c_184_28
Type: TC
Location: 31438 - 32307 (-)
Gene ID: Rep_1398_c_184_29
Type: pfam
Location: 32438 - 34084 (-)
Gene ID: Rep_1398_c_184_30
Type: TC
Location: 34219 - 35388 (-)
Gene ID: Rep_1398_c_184_31
Type:
Location: 35545 - 35772 (+)
Gene ID: Rep_1398_c_184_32
Type: TC
Location: 35838 - 37769 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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