Cluster: Rep_1398_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: Rep_1398
- CGC Family ID: CGCFAM_00020
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1398_c_11 | Rep_1398_c_11_15 | 15738 | 17624 | + | 4.A.1.2.11 |
| CAZyme | Rep_1398_c_11 | Rep_1398_c_11_16 | 17755 | 19167 | + | GH1 |
| pfam | Rep_1398_c_11 | Rep_1398_c_11_17 | 19340 | 20167 | + | PRD | PRD | CAT_RBD |
| NULL(UNKNOWN) | Rep_1398_c_11 | Rep_1398_c_11_18 | 20636 | 20746 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1398_c_11 | Rep_1398_c_11_19 | 20785 | 22230 | + | 4.A.1.1.8 |
| CAZyme | Rep_1398_c_11 | Rep_1398_c_11_20 | 22407 | 23735 | + | GH4 |
Gene ID: Rep_1398_c_11_15
Type: TC
Location: 15738 - 17624 (+)
Type: TC
Location: 15738 - 17624 (+)
Gene ID: Rep_1398_c_11_16
Type: CAZyme
Location: 17755 - 19167 (+)
Type: CAZyme
Location: 17755 - 19167 (+)
Gene ID: Rep_1398_c_11_17
Type: pfam
Location: 19340 - 20167 (+)
Type: pfam
Location: 19340 - 20167 (+)
Gene ID: Rep_1398_c_11_18
Type:
Location: 20636 - 20746 (+)
Type:
Location: 20636 - 20746 (+)
Gene ID: Rep_1398_c_11_19
Type: TC
Location: 20785 - 22230 (+)
Type: TC
Location: 20785 - 22230 (+)
Gene ID: Rep_1398_c_11_20
Type: CAZyme
Location: 22407 - 23735 (+)
Type: CAZyme
Location: 22407 - 23735 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.