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Cluster: Rep_1398_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1398_c_151 Rep_1398_c_151_9 4927 5778 - 3.A.1.149.1
TF Rep_1398_c_151 Rep_1398_c_151_10 5781 6155 - GntR
peptidase Rep_1398_c_151 Rep_1398_c_151_11 6279 7139 - S66.UPW
CAZyme Rep_1398_c_151 Rep_1398_c_151_12 7447 12444 + CBM32 | CBM40 | CBM40 | GH33
CAZyme Rep_1398_c_151 Rep_1398_c_151_13 12570 16988 + GH29
TC Rep_1398_c_151 Rep_1398_c_151_14 17203 17835 + 9.B.20.1.4
NULL(UNKNOWN) Rep_1398_c_151 Rep_1398_c_151_15 17955 18278 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1398_c_151 Rep_1398_c_151_16 18673 19479 + 2.A.5.5.2
Gene ID: Rep_1398_c_151_9
Type: TC
Location: 4927 - 5778 (-)
Gene ID: Rep_1398_c_151_10
Type: TF
Location: 5781 - 6155 (-)
Gene ID: Rep_1398_c_151_11
Type: peptidase
Location: 6279 - 7139 (-)
Gene ID: Rep_1398_c_151_12
Type: CAZyme
Location: 7447 - 12444 (+)
Gene ID: Rep_1398_c_151_13
Type: CAZyme
Location: 12570 - 16988 (+)
Gene ID: Rep_1398_c_151_14
Type: TC
Location: 17203 - 17835 (+)
Gene ID: Rep_1398_c_151_15
Type:
Location: 17955 - 18278 (+)
Gene ID: Rep_1398_c_151_16
Type: TC
Location: 18673 - 19479 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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