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Cluster: Rep_1398_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1398_c_8 Rep_1398_c_8_1 383 1375 + 3.A.1.1.10
TC Rep_1398_c_8 Rep_1398_c_8_2 1387 2283 + 3.A.1.1.29
STP Rep_1398_c_8 Rep_1398_c_8_3 2307 3917 + SBP_bac_1
CAZyme Rep_1398_c_8 Rep_1398_c_8_4 4095 5570 + GH32
TF Rep_1398_c_8 Rep_1398_c_8_5 5628 6659 - LacI
CAZyme Rep_1398_c_8 Rep_1398_c_8_6 6829 8163 + GH32
TC Rep_1398_c_8 Rep_1398_c_8_7 8252 9697 + 4.A.1.2.8
TF Rep_1398_c_8 Rep_1398_c_8_8 10051 10512 - MerR
TC Rep_1398_c_8 Rep_1398_c_8_9 10576 10857 + 2.A.66.1.37
Gene ID: Rep_1398_c_8_1
Type: TC
Location: 383 - 1375 (+)
Gene ID: Rep_1398_c_8_2
Type: TC
Location: 1387 - 2283 (+)
Gene ID: Rep_1398_c_8_3
Type: STP
Location: 2307 - 3917 (+)
Gene ID: Rep_1398_c_8_4
Type: CAZyme
Location: 4095 - 5570 (+)
Gene ID: Rep_1398_c_8_5
Type: TF
Location: 5628 - 6659 (-)
Gene ID: Rep_1398_c_8_6
Type: CAZyme
Location: 6829 - 8163 (+)
Gene ID: Rep_1398_c_8_7
Type: TC
Location: 8252 - 9697 (+)
Gene ID: Rep_1398_c_8_8
Type: TF
Location: 10051 - 10512 (-)
Gene ID: Rep_1398_c_8_9
Type: TC
Location: 10576 - 10857 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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