Cluster: Rep_1398_CGC34
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1398
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1398_c_105 | Rep_1398_c_105_60 | 61664 | 62944 | + | 2.A.23.1.5 |
| NULL(UNKNOWN) | Rep_1398_c_105 | Rep_1398_c_105_61 | 63002 | 63154 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1398_c_105 | Rep_1398_c_105_62 | 63296 | 65725 | - | GH63 |
| NULL(UNKNOWN) | Rep_1398_c_105 | Rep_1398_c_105_63 | 65948 | 66421 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_1398_c_105 | Rep_1398_c_105_64 | 66526 | 67662 | - | NAD_Gly3P_dh_N | Octopine_DH | ApbA | F420_oxidored |
| TC | Rep_1398_c_105 | Rep_1398_c_105_65 | 67895 | 68614 | + | 2.A.45.3.1 |
| TC | Rep_1398_c_105 | Rep_1398_c_105_66 | 68906 | 69820 | + | 3.A.1.105.9 |
| pfam | Rep_1398_c_105 | Rep_1398_c_105_67 | 69820 | 71097 | + | ABC2_membrane_3 |
| CAZyme | Rep_1398_c_105 | Rep_1398_c_105_68 | 71150 | 72997 | - | GH20 |
| CAZyme | Rep_1398_c_105 | Rep_1398_c_105_69 | 73077 | 76730 | - | GH85 |
| sulfatase | Rep_1398_c_105 | Rep_1398_c_105_70 | 76759 | 79194 | - | S1_14 |
| pfam | Rep_1398_c_105 | Rep_1398_c_105_71 | 79408 | 80292 | - | ROK |
| CAZyme | Rep_1398_c_105 | Rep_1398_c_105_72 | 80368 | 83499 | - | GH38 |
Gene ID: Rep_1398_c_105_60
Type: TC
Location: 61664 - 62944 (+)
Type: TC
Location: 61664 - 62944 (+)
Gene ID: Rep_1398_c_105_61
Type:
Location: 63002 - 63154 (-)
Type:
Location: 63002 - 63154 (-)
Gene ID: Rep_1398_c_105_62
Type: CAZyme
Location: 63296 - 65725 (-)
Type: CAZyme
Location: 63296 - 65725 (-)
Gene ID: Rep_1398_c_105_63
Type:
Location: 65948 - 66421 (-)
Type:
Location: 65948 - 66421 (-)
Gene ID: Rep_1398_c_105_64
Type: pfam
Location: 66526 - 67662 (-)
Type: pfam
Location: 66526 - 67662 (-)
Gene ID: Rep_1398_c_105_65
Type: TC
Location: 67895 - 68614 (+)
Type: TC
Location: 67895 - 68614 (+)
Gene ID: Rep_1398_c_105_66
Type: TC
Location: 68906 - 69820 (+)
Type: TC
Location: 68906 - 69820 (+)
Gene ID: Rep_1398_c_105_67
Type: pfam
Location: 69820 - 71097 (+)
Type: pfam
Location: 69820 - 71097 (+)
Gene ID: Rep_1398_c_105_68
Type: CAZyme
Location: 71150 - 72997 (-)
Type: CAZyme
Location: 71150 - 72997 (-)
Gene ID: Rep_1398_c_105_69
Type: CAZyme
Location: 73077 - 76730 (-)
Type: CAZyme
Location: 73077 - 76730 (-)
Gene ID: Rep_1398_c_105_70
Type: sulfatase
Location: 76759 - 79194 (-)
Type: sulfatase
Location: 76759 - 79194 (-)
Gene ID: Rep_1398_c_105_71
Type: pfam
Location: 79408 - 80292 (-)
Type: pfam
Location: 79408 - 80292 (-)
Gene ID: Rep_1398_c_105_72
Type: CAZyme
Location: 80368 - 83499 (-)
Type: CAZyme
Location: 80368 - 83499 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.