Cluster: Rep_1398_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1398
- CGC Family ID: CGCFAM_02256
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1398_c_104 | Rep_1398_c_104_1 | 80 | 1486 | - | 2.A.25.1.4 |
| pfam | Rep_1398_c_104 | Rep_1398_c_104_2 | 1860 | 3527 | - | HMGL-like | LeuA_dimer | IPMS_D2 |
| pfam | Rep_1398_c_104 | Rep_1398_c_104_3 | 3871 | 4830 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| TC | Rep_1398_c_104 | Rep_1398_c_104_4 | 5117 | 5881 | - | 1.A.1.17.2 |
| CAZyme | Rep_1398_c_104 | Rep_1398_c_104_5 | 6024 | 7523 | - | GH77 |
Gene ID: Rep_1398_c_104_1
Type: TC
Location: 80 - 1486 (-)
Type: TC
Location: 80 - 1486 (-)
Gene ID: Rep_1398_c_104_2
Type: pfam
Location: 1860 - 3527 (-)
Type: pfam
Location: 1860 - 3527 (-)
Gene ID: Rep_1398_c_104_3
Type: pfam
Location: 3871 - 4830 (-)
Type: pfam
Location: 3871 - 4830 (-)
Gene ID: Rep_1398_c_104_4
Type: TC
Location: 5117 - 5881 (-)
Type: TC
Location: 5117 - 5881 (-)
Gene ID: Rep_1398_c_104_5
Type: CAZyme
Location: 6024 - 7523 (-)
Type: CAZyme
Location: 6024 - 7523 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.