Cluster: Rep_1398_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1398
- CGC Family ID: CGCFAM_02412
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1398_c_97 | Rep_1398_c_97_185 | 217623 | 218306 | + | 8.A.3.2.1 |
| TC | Rep_1398_c_97 | Rep_1398_c_97_186 | 218421 | 220322 | + | 9.B.18.2.1 |
| TC | Rep_1398_c_97 | Rep_1398_c_97_187 | 220368 | 220994 | + | 9.B.18.1.2 |
| pfam | Rep_1398_c_97 | Rep_1398_c_97_188 | 221003 | 221593 | + | PglD_N |
| NULL(UNKNOWN) | Rep_1398_c_97 | Rep_1398_c_97_189 | 222326 | 222577 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1398_c_97 | Rep_1398_c_97_190 | 222580 | 223746 | + | GT4 |
| TC | Rep_1398_c_97 | Rep_1398_c_97_191 | 223758 | 224843 | + | 9.B.183.1.9 |
| CAZyme | Rep_1398_c_97 | Rep_1398_c_97_192 | 224870 | 226030 | + | GT4 |
| pfam | Rep_1398_c_97 | Rep_1398_c_97_193 | 226020 | 226928 | + | ATPgrasp_TupA |
| pfam | Rep_1398_c_97 | Rep_1398_c_97_194 | 226976 | 228103 | + | PGA_cap |
| CAZyme | Rep_1398_c_97 | Rep_1398_c_97_195 | 228093 | 229079 | + | GT2 |
| CAZyme | Rep_1398_c_97 | Rep_1398_c_97_196 | 229076 | 229879 | + | GT2 |
Gene ID: Rep_1398_c_97_185
Type: TC
Location: 217623 - 218306 (+)
Type: TC
Location: 217623 - 218306 (+)
Gene ID: Rep_1398_c_97_186
Type: TC
Location: 218421 - 220322 (+)
Type: TC
Location: 218421 - 220322 (+)
Gene ID: Rep_1398_c_97_187
Type: TC
Location: 220368 - 220994 (+)
Type: TC
Location: 220368 - 220994 (+)
Gene ID: Rep_1398_c_97_188
Type: pfam
Location: 221003 - 221593 (+)
Type: pfam
Location: 221003 - 221593 (+)
Gene ID: Rep_1398_c_97_189
Type:
Location: 222326 - 222577 (+)
Type:
Location: 222326 - 222577 (+)
Gene ID: Rep_1398_c_97_190
Type: CAZyme
Location: 222580 - 223746 (+)
Type: CAZyme
Location: 222580 - 223746 (+)
Gene ID: Rep_1398_c_97_191
Type: TC
Location: 223758 - 224843 (+)
Type: TC
Location: 223758 - 224843 (+)
Gene ID: Rep_1398_c_97_192
Type: CAZyme
Location: 224870 - 226030 (+)
Type: CAZyme
Location: 224870 - 226030 (+)
Gene ID: Rep_1398_c_97_193
Type: pfam
Location: 226020 - 226928 (+)
Type: pfam
Location: 226020 - 226928 (+)
Gene ID: Rep_1398_c_97_194
Type: pfam
Location: 226976 - 228103 (+)
Type: pfam
Location: 226976 - 228103 (+)
Gene ID: Rep_1398_c_97_195
Type: CAZyme
Location: 228093 - 229079 (+)
Type: CAZyme
Location: 228093 - 229079 (+)
Gene ID: Rep_1398_c_97_196
Type: CAZyme
Location: 229076 - 229879 (+)
Type: CAZyme
Location: 229076 - 229879 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.